Flavobacterium enshiense: LZF87_02640
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Entry
LZF87_02640 CDS
T08644
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
feh
Flavobacterium enshiense
Pathway
feh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
feh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LZF87_02640 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
feh03400
]
LZF87_02640 (mfd)
Enzymes [BR:
feh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZF87_02640 (mfd)
DNA repair and recombination proteins [BR:
feh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LZF87_02640 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UOK43026
LinkDB
All DBs
Position
575989..579375
Genome browser
AA seq
1128 aa
AA seq
DB search
MTYLFKYKTFTLKTDIQNIYNKSAKVTQIAEQLQKRESKIQMKGLIGSSLSFVIETLFQK
TDLPYLLIFQDKEEAAYYLNDLESLINDQDVLFYPGSYRRPYQIEETDNANVLLRAEVLN
RINSRKKPAIIVTYPDALFEKVVTRKELDKNTLKVAVGDSISIDFINEVLFEYNFKRVDF
VSEPGEFSVRGGIIDVFSFSNDNPYRIEFFGNEVDSIRSFDVETQLSIEKQKKITIIPNV
ENKFLKENRESFLEYINPQTVLFIQNTDLLLTQLDKLFGKATEAFEKLSKDIQHTAPEAM
FLNQQAFVKKALDFTLVELATKPIFRTEKTFEFHTQPQPSFNKQFDLLLNNLNDNHFNGI
KNYLFCSNDGQAKRFHDIFESLDEANHENIRKQYHTIVFSLFQGFIDEENQIACYTDHQI
FERYHKFNLKNGYSKKQTITLKELTTLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIK
LVYADNDIVYVSIHSLHKISKYNGKDGAPPKIYKLGSTAWKTLKQKTKARVKHIAFNLIQ
LYAKRRLDKGFAFAPDSYLQAELESSFIYEDTPDQLKATQEVKTDMENDRPMDRLVCGDV
GFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHYKTFRERLKEMPVNVAYINRFRSAK
QKAETLKQLEEGKLDILIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAHNVD
TLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIDTQVVGFNEEVIRDAISYEIERGG
QVYFINNRIENIKEIAGMIQRLVPGAKVGVGHGQMDGKKLEELMLAFMDGEFDVLVATTI
IESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRI
QALEQFSELGSGFNIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKIMNEAIEELKENE
FKDLYPEENDIETKEYVKDIQIDTDFELLFPDEYINNISERLNLYNELSLIKTEEALQQY
EQKLIDRFGALPKQAVALLNSIRIKWKATHIGIEKLVLKQGKMVGYFVSDQQSDFYQSAK
FMKVLQFVQQNGNLCKMKEKETKNGLRLLLTFENVKSVKRALELIEMI
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgacttatttgtttaaatataaaacgtttacattgaaaaccgacattcaaaatatctat
aataaatcggcgaaagttacccagatagcggaacaacttcaaaaacgcgaatcgaaaatc
caaatgaaaggattaatcggttcgtcgttgtcgtttgtcatcgaaacccttttccaaaaa
accgacctcccttacttactgatttttcaagacaaggaagaagcggcctattatcttaat
gatctggaaagcctgatcaacgatcaggacgtgttattctatccgggctcgtatcgtcgc
ccatatcaaattgaagaaactgacaacgccaatgttttattacgagccgaagtactgaac
cgtataaattcgcgcaaaaaaccggccatcatcgttacctatcccgatgcactttttgaa
aaggtggttacccgaaaggaattggacaaaaacacgctgaaagtagctgttggcgattct
atttccatcgatttcattaacgaggtactttttgaatacaatttcaaacgcgtggatttc
gtttccgaaccgggcgaattttccgtacgaggcggaatcattgacgtgttttcgttttcc
aatgacaatccgtaccgaattgaattctttggcaacgaagtggattccatacgaagtttc
gatgtcgaaacacagctttccatcgaaaaacagaagaaaatcaccattatcccgaatgtt
gaaaataaattcctgaaagagaaccgcgaaagtttcctggaatacataaatccgcaaact
gtgcttttcattcagaacacagatttgttgttaacacaattggacaaattgttcggaaaa
gccacggaagcctttgaaaaactctcaaaagacattcagcatacagctccggaagccatg
tttttaaaccagcaggctttcgtaaaaaaggctttggattttacgttagtggaattggct
accaaacccattttccgaaccgaaaaaacgtttgaatttcacacacagccgcaaccatcg
ttcaacaagcagtttgatttattgttaaataatctaaacgacaatcattttaacggcatc
aaaaactatttgttctgttccaatgacggacaggcaaaacgtttccacgatatttttgaa
agtctggatgaagcgaatcacgaaaacattcgcaaacaataccacaccattgttttttcg
ttgtttcaggggttcatcgacgaagaaaaccaaattgcctgttataccgatcatcagata
ttcgagcgttatcataagttcaatctgaaaaatgggtattcgaagaagcagactatcaca
ctgaaggaacttaccaccctttccgtgggtgattatgtgacacacatcgatcacggaatc
gggaaatttggcggattgcaaaaaattcaggtggaaggcaaaacgcaggaagccatcaaa
ttggtctatgccgataacgatattgtgtacgtaagcattcactcgctgcacaaaatatcg
aaatacaacggaaaagacggagcgcctccaaaaatatacaagctaggctcaacagcctgg
aaaactttaaaacaaaaaaccaaagcccgtgtaaaacacattgcgttcaatctgattcag
ctatacgctaaacgccgtttagacaaaggttttgcttttgcaccggacagttatttgcag
gccgaactggaatcctcctttatttacgaagacacgcccgatcagttaaaagctacacag
gaagtaaaaaccgacatggagaacgaccgcccgatggaccgtttggtttgtggtgacgtt
ggtttcggaaaaaccgaagtcgctatccgtgcggcttttaaagcggtcgataatggaaag
caagtggccgttttggttccgacaaccattttggcgtttcagcattataaaaccttccgt
gaacgcttaaaagaaatgccggtgaatgttgcatacatcaatcgtttccgtagcgccaaa
caaaaagcagaaaccctgaaacaacttgaagaaggaaaactcgacattcttatcggaact
catcagttggtcaataaaaatgtagttttcaaggatttgggactacttattgtggacgag
gagcaaaagttcggtgtaaatgtaaaagataaactgaaaaccatcgcgcataacgtagac
acgctgaccttaacggcgacaccaatcccgagaacccttcagttttcgctaatggcggca
cgtgatttatcggttataacaacgccgccaccgaaccgttatccgatagacacacaggtt
gttggttttaacgaagaagtgattcgtgatgcgatttcttatgagatcgagcgtggcgga
caagtatatttcatcaacaaccgtattgaaaacatcaaggaaattgccggtatgattcag
cgtttggttcccggagcgaaagttggcgtgggacacggtcagatggacggtaaaaaactc
gaagaactgatgttggcctttatggacggcgaatttgatgttttggtagccacaaccatc
attgaaagtggtttagacgtaccgaatgccaatacgattttcatcaacaatgccaataat
ttcggattgtctgatttgcatcagatgcgtggccgtgtgggacgaagcaataaaaaagcg
ttctgttattttatttgtccgccctattctgctatgaccgaagaagcccgaaaacgaatt
caggctttagagcagttcagcgaactgggcagcggtttcaacattgccatgaaagatttg
gaaattcgcggcgcaggggatttattgggtggagaacaaagcggtttcatcaatgacatt
ggcttcgacacctatcagaaaatcatgaacgaagccatcgaggaattaaaagaaaacgaa
ttcaaggacttgtatccggaagaaaacgacatcgaaaccaaggaatacgtcaaagatatt
cagattgataccgatttcgaattattgttcccggacgaatacattaacaacatttcggaa
cgactgaacctgtacaatgaattgagtttgattaaaacggaagaagcgcttcagcaatac
gaacaaaaactgattgaccgtttcggtgccctgccaaaacaagcggtggctttactgaac
agcattcgtatcaaatggaaagcgacccatatcggaattgaaaaattggtactgaagcaa
ggaaaaatggttggttattttgtttccgaccagcaatcggatttctaccagtcggccaaa
ttcatgaaagtgttgcagttcgtacaacaaaacggaaacctctgcaaaatgaaggagaaa
gaaaccaaaaacggtttgcgattgctactgactttcgaaaatgtaaaatcagtaaaacgc
gcattggaactaatagaaatgatataa
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