Ferruginibacter albus: K9M53_05880
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Entry
K9M53_05880 CDS
T07524
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fei
Ferruginibacter albus
Pathway
fei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K9M53_05880 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fei03400
]
K9M53_05880 (ligD)
Enzymes [BR:
fei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K9M53_05880 (ligD)
DNA repair and recombination proteins [BR:
fei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K9M53_05880 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UAY53695
LinkDB
All DBs
Position
complement(1313065..1315797)
Genome browser
AA seq
910 aa
AA seq
DB search
MSLSTYKKKRNFKESPEPTGGKAEAGKLRFVIQKHDASHLHYDFRLEMEGVLKSWAVPKG
PSTDPSIKRLAMMVEDHPYDYRNFEGIIPSGYGAGTVIVWDEGYYSPTEKKDGDKSAQDK
ELRRQLHQGKLKFTLNGSKLKGDYALVKSTARGENAWLLFKIKDNYASKEDITLKDKSVL
SKKTLAQVEKTTTNFYGSKRVKEAKTKSKKEVSLNKRPAVKKASLRNKKDKEKEKAEQTS
GRKSSDEILKAAPKGKFFSTIKPMLATLVDKPFEDEGWLYEVKWDGYRAVAFMNGNKVVL
QSRNEKSFAEKFYPVFDALKKWKINTVVDGEIVVVDENGISNFGALQNWRSEADGELYYY
LFDMLWLDGKDLRGLPLTERRALLEANIPDDGIIKISKAFQESGIEFFEVAKKTGLEGII
AKRADSVYATGDRSKDWLKIKANKRQEMVIGGYTKNDDSSKAFSALLVGVHENGKLIYTG
KVGTGFNDKTQKEMLAKFKKLIIKTPPFNETPDINKPSRFRPNPPHATATWLKPILVCEV
AFTEMTSDGIMRHPSFEGMRIDKKASEVVREKAKVTTKTVKETNALHKSNVITARGKTER
KTLLNPTDDTQVRQINGHELKFNNLHKLYWPKEKITKRDLLNYYYQVAPYILPYLKDRPQ
SMLRHPDGITGQSFFFKDITGKAPDWLETFLYHSDADNRDRKYLVAKDEASLLYMASLGC
IEMNPWHSRVQKEDYPDWCIIDLDPAKNTFDQVIEAARVTKDILESLGIEGYPKTSGSTG
MHIYIPLGAKYTYEQSKEFARVIARMVHEQLPKFTSIERTVKDRKGKMYIDFLQNRPQAT
VSAPYSVRPKPGATVSMPLHWDEVKPGLKMSDFTIMNAVDRIRSEGDIFKPVIGKGIDMQ
KAIKKFETAS
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgagtctaagcacatataaaaagaaacggaatttcaaggaaagccctgaacccacaggt
ggcaaggcggaagcaggaaaactgcgcttcgtcattcaaaaacacgacgcctcgcatctt
cattacgattttcgtcttgaaatggaaggtgttcttaaaagctgggctgttcccaaaggc
ccgtcaactgatccaagcatcaagagacttgcgatgatggtcgaagaccatccctacgat
tacaggaattttgaaggcattattccaagcggctacggcgccggaacagtgattgtctgg
gatgaaggatattattcacctaccgaaaaaaaagatggcgacaagagcgcacaggataaa
gagttacgccgtcaattgcatcaaggaaaattgaagttcaccttgaatggatcaaagctt
aaaggtgattatgcacttgtgaagtcaacagcacgcggcgaaaatgcctggctgttgttc
aagataaaagataactacgcatccaaagaagatatcaccctgaaagacaagtccgttctt
tcaaaaaagactttggcacaggttgaaaagacaactacaaacttctatggctctaagcgt
gtaaaggaagcaaaaacgaaaagcaaaaaagaagtctctctcaacaaaagaccagccgta
aaaaaggcaagcttgcgcaataaaaaagacaaagaaaaagaaaaagcagagcaaacttca
ggcagaaaatcttctgatgagattttaaaagctgccccaaaaggaaaattcttttcaaca
attaagcccatgctggcgactttggtagacaagccctttgaagatgaaggctggctttat
gaggtgaaatgggatggctatcgtgccgtggcatttatgaacggtaacaaagtcgtcctg
cagtccagaaatgaaaagtcctttgccgaaaaattttatcctgtttttgatgctttaaaa
aaatggaaaattaataccgtcgtagacggagaaattgttgtggtagatgaaaacggcatt
tcaaattttggcgctttacaaaactggcgcagcgaagcagatggcgagctttattattat
ctctttgacatgctctggctcgatggcaaggatttaagaggtttaccacttacagaaagg
cgtgcccttcttgaagccaatatacctgacgatggaattatcaagattagcaaagctttt
caggaatcaggaatagaattttttgaggttgccaaaaaaacaggcttggaaggcatcatt
gctaaaagagccgacagtgtttacgcgacaggcgatcgttcaaaagactggctgaaaatt
aaagccaataaaagacaggagatggttatcggcggatatacaaagaatgatgatagctct
aaagcttttagtgccttattagtaggtgtacacgaaaacggcaaactcatctatacggga
aaggtcggtacgggctttaatgacaagacacaaaaggaaatgcttgcaaaatttaaaaaa
ctcatcatcaaaacaccacctttcaatgaaacccccgatatcaacaaaccttcaagattc
agacctaatccacctcatgcaacggcgacttggcttaagcctattcttgtttgcgaggta
gcatttaccgaaatgacgtcggacggcatcatgcgtcatccttcttttgagggaatgcgt
atcgataaaaaagcttccgaagtcgtgcgtgaaaaagcaaaagtaacaacgaagacggtg
aaagaaacgaacgcacttcataaaagtaatgttattactgcacgaggcaagacagaaaga
aagacacttctaaatccaacagacgacacgcaagtccggcaaataaatggtcatgaattg
aagtttaacaatcttcacaaactctattggcctaaagaaaaaatcaccaagcgcgactta
ctaaattattattatcaggttgcaccgtatatattgccctatctcaaagaccgcccgcaa
tctatgttacggcatcctgacggcattacgggacaaagttttttctttaaagatattact
ggtaaagcgccggattggctcgaaacttttttatatcacagtgatgcagataaccgtgac
cgtaagtatctcgtcgcaaaggacgaagcaagccttttatacatggcttcacttggttgc
atcgaaatgaatccttggcacagccgcgtgcaaaaagaagattatccggattggtgcatt
atcgacttagaccctgccaagaacaccttcgatcaggtgatagaggcagcacgggttaca
aaggatattcttgaaagccttggcatagaaggttatcccaaaaccagcggctcaacaggc
atgcatatctatatacctttaggtgcgaaatatacttacgaacagtcgaaagaatttgcg
cgcgttattgcaagaatggtgcatgaacaattaccaaaatttacaagcattgaaagaacg
gttaaagaccgcaaaggtaaaatgtacatcgacttcttacaaaacagaccccaagctact
gtctccgcgccctactctgtaagaccaaagccaggtgcgacggtttccatgccccttcat
tgggatgaagtaaagcccgggcttaaaatgtctgacttcacaatcatgaatgccgtcgac
cgaataaggtcggaaggagatattttcaaacccgtcatcggtaaaggcattgacatgcaa
aaagccataaagaaatttgaaacagcatcatga
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