KEGG   Ferruginibacter albus: K9M53_05880
Entry
K9M53_05880       CDS       T07524                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fei  Ferruginibacter albus
Pathway
fei03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fei00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    K9M53_05880 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fei03400]
    K9M53_05880 (ligD)
Enzymes [BR:fei01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     K9M53_05880 (ligD)
DNA repair and recombination proteins [BR:fei03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     K9M53_05880 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase DNA_primase_S DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: UAY53695
LinkDB
Position
complement(1313065..1315797)
AA seq 910 aa
MSLSTYKKKRNFKESPEPTGGKAEAGKLRFVIQKHDASHLHYDFRLEMEGVLKSWAVPKG
PSTDPSIKRLAMMVEDHPYDYRNFEGIIPSGYGAGTVIVWDEGYYSPTEKKDGDKSAQDK
ELRRQLHQGKLKFTLNGSKLKGDYALVKSTARGENAWLLFKIKDNYASKEDITLKDKSVL
SKKTLAQVEKTTTNFYGSKRVKEAKTKSKKEVSLNKRPAVKKASLRNKKDKEKEKAEQTS
GRKSSDEILKAAPKGKFFSTIKPMLATLVDKPFEDEGWLYEVKWDGYRAVAFMNGNKVVL
QSRNEKSFAEKFYPVFDALKKWKINTVVDGEIVVVDENGISNFGALQNWRSEADGELYYY
LFDMLWLDGKDLRGLPLTERRALLEANIPDDGIIKISKAFQESGIEFFEVAKKTGLEGII
AKRADSVYATGDRSKDWLKIKANKRQEMVIGGYTKNDDSSKAFSALLVGVHENGKLIYTG
KVGTGFNDKTQKEMLAKFKKLIIKTPPFNETPDINKPSRFRPNPPHATATWLKPILVCEV
AFTEMTSDGIMRHPSFEGMRIDKKASEVVREKAKVTTKTVKETNALHKSNVITARGKTER
KTLLNPTDDTQVRQINGHELKFNNLHKLYWPKEKITKRDLLNYYYQVAPYILPYLKDRPQ
SMLRHPDGITGQSFFFKDITGKAPDWLETFLYHSDADNRDRKYLVAKDEASLLYMASLGC
IEMNPWHSRVQKEDYPDWCIIDLDPAKNTFDQVIEAARVTKDILESLGIEGYPKTSGSTG
MHIYIPLGAKYTYEQSKEFARVIARMVHEQLPKFTSIERTVKDRKGKMYIDFLQNRPQAT
VSAPYSVRPKPGATVSMPLHWDEVKPGLKMSDFTIMNAVDRIRSEGDIFKPVIGKGIDMQ
KAIKKFETAS
NT seq 2733 nt   +upstreamnt  +downstreamnt
atgagtctaagcacatataaaaagaaacggaatttcaaggaaagccctgaacccacaggt
ggcaaggcggaagcaggaaaactgcgcttcgtcattcaaaaacacgacgcctcgcatctt
cattacgattttcgtcttgaaatggaaggtgttcttaaaagctgggctgttcccaaaggc
ccgtcaactgatccaagcatcaagagacttgcgatgatggtcgaagaccatccctacgat
tacaggaattttgaaggcattattccaagcggctacggcgccggaacagtgattgtctgg
gatgaaggatattattcacctaccgaaaaaaaagatggcgacaagagcgcacaggataaa
gagttacgccgtcaattgcatcaaggaaaattgaagttcaccttgaatggatcaaagctt
aaaggtgattatgcacttgtgaagtcaacagcacgcggcgaaaatgcctggctgttgttc
aagataaaagataactacgcatccaaagaagatatcaccctgaaagacaagtccgttctt
tcaaaaaagactttggcacaggttgaaaagacaactacaaacttctatggctctaagcgt
gtaaaggaagcaaaaacgaaaagcaaaaaagaagtctctctcaacaaaagaccagccgta
aaaaaggcaagcttgcgcaataaaaaagacaaagaaaaagaaaaagcagagcaaacttca
ggcagaaaatcttctgatgagattttaaaagctgccccaaaaggaaaattcttttcaaca
attaagcccatgctggcgactttggtagacaagccctttgaagatgaaggctggctttat
gaggtgaaatgggatggctatcgtgccgtggcatttatgaacggtaacaaagtcgtcctg
cagtccagaaatgaaaagtcctttgccgaaaaattttatcctgtttttgatgctttaaaa
aaatggaaaattaataccgtcgtagacggagaaattgttgtggtagatgaaaacggcatt
tcaaattttggcgctttacaaaactggcgcagcgaagcagatggcgagctttattattat
ctctttgacatgctctggctcgatggcaaggatttaagaggtttaccacttacagaaagg
cgtgcccttcttgaagccaatatacctgacgatggaattatcaagattagcaaagctttt
caggaatcaggaatagaattttttgaggttgccaaaaaaacaggcttggaaggcatcatt
gctaaaagagccgacagtgtttacgcgacaggcgatcgttcaaaagactggctgaaaatt
aaagccaataaaagacaggagatggttatcggcggatatacaaagaatgatgatagctct
aaagcttttagtgccttattagtaggtgtacacgaaaacggcaaactcatctatacggga
aaggtcggtacgggctttaatgacaagacacaaaaggaaatgcttgcaaaatttaaaaaa
ctcatcatcaaaacaccacctttcaatgaaacccccgatatcaacaaaccttcaagattc
agacctaatccacctcatgcaacggcgacttggcttaagcctattcttgtttgcgaggta
gcatttaccgaaatgacgtcggacggcatcatgcgtcatccttcttttgagggaatgcgt
atcgataaaaaagcttccgaagtcgtgcgtgaaaaagcaaaagtaacaacgaagacggtg
aaagaaacgaacgcacttcataaaagtaatgttattactgcacgaggcaagacagaaaga
aagacacttctaaatccaacagacgacacgcaagtccggcaaataaatggtcatgaattg
aagtttaacaatcttcacaaactctattggcctaaagaaaaaatcaccaagcgcgactta
ctaaattattattatcaggttgcaccgtatatattgccctatctcaaagaccgcccgcaa
tctatgttacggcatcctgacggcattacgggacaaagttttttctttaaagatattact
ggtaaagcgccggattggctcgaaacttttttatatcacagtgatgcagataaccgtgac
cgtaagtatctcgtcgcaaaggacgaagcaagccttttatacatggcttcacttggttgc
atcgaaatgaatccttggcacagccgcgtgcaaaaagaagattatccggattggtgcatt
atcgacttagaccctgccaagaacaccttcgatcaggtgatagaggcagcacgggttaca
aaggatattcttgaaagccttggcatagaaggttatcccaaaaccagcggctcaacaggc
atgcatatctatatacctttaggtgcgaaatatacttacgaacagtcgaaagaatttgcg
cgcgttattgcaagaatggtgcatgaacaattaccaaaatttacaagcattgaaagaacg
gttaaagaccgcaaaggtaaaatgtacatcgacttcttacaaaacagaccccaagctact
gtctccgcgccctactctgtaagaccaaagccaggtgcgacggtttccatgccccttcat
tgggatgaagtaaagcccgggcttaaaatgtctgacttcacaatcatgaatgccgtcgac
cgaataaggtcggaaggagatattttcaaacccgtcatcggtaaaggcattgacatgcaa
aaagccataaagaaatttgaaacagcatcatga

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