Flavivirga eckloniae: C1H87_11055
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Entry
C1H87_11055 CDS
T05284
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fek
Flavivirga eckloniae
Pathway
fek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1H87_11055 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fek03400
]
C1H87_11055 (mfd)
Enzymes [BR:
fek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1H87_11055 (mfd)
DNA repair and recombination proteins [BR:
fek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1H87_11055 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
AUP79211
UniProt:
A0A2K9PQ70
LinkDB
All DBs
Position
complement(2705349..2708729)
Genome browser
AA seq
1126 aa
AA seq
DB search
MSEIMIAKTYEQTLQMQNLQTTIAQTHSQDKPKLHLKGLVGSSFSFVISSIFKQADKPFL
LVFNDKEEAAFYLNDLEQLCGDKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSQK
KPAIIVTYPDALFEKVVTRKELERNTLKVGVGDNLSIDFVNEVLFEYQFKRVDFVSEPGE
FSVRGGIVDVFSFSHDEPFRIEFFGDEVDSIRTFDVETQLSIDQIKKINIIPNVANKFLE
EKRQSFFKYIAQKTVICLKNVDLLFSRIDDFYGKAEEAFKTLSKDIKHAEPNELFCNSQL
LKEQLLNFSIIEFGSSTTMSSAKDTSLSIEFNTKPQPSFNKQFNLLIEDLIANHNKGFTN
YIACVSEQQAKRFHDIFEDISADKSIDDEVHYKTIVLSLHQGFIDHDNKIVCYTDHQIFE
RYHKFHLKSGYAKKQAITLKELTNLDIGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKLV
YGERDVLYLSIHSLHKITKFNGKDGKPPKIYKLGSNAWKTLKQKTKARVKHVAFNLIKLY
AKRKTEKGYQYNPDSYMQHELEASFIYEDTPDQSTATADIKADMESERPMDRLVCGDVGF
GKTEVAIRAAFKAVDNGKQVAVLVPTTILAYQHYRTFRGRLKDFPVTVDYVNRFRTGKEK
RETLEGLEKGTVDIIIGTHQLVNKNVKFKDLGLLVVDEEQKFGVAVKEKLKTIKDNVDVL
TLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESHVIRFNEDAIRDAVSYEIERGGQI
FFIHNRIENIKEVAGMIQRLVPDAKIGIGHGQLDGKKLEQLMLAFMDGAFDVLVSTTIVE
SGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDDARKRITA
LEQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFK
DLYNEDEEDKVYVKEVTIDTDFELLFPDNYVNNIAERLNLYTQLNNLKTEEELSIFKSEL
LDRFGELPEQVTDLLNSVQIKWIATKIGFEKVIMKQGKFIGYFINDQQSSFYQSSNFTKV
LKFVQTHPNDCKMKEKQTRNGLRLMLSFDNVKSVEQALKVLKPIVA
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaatcatgatcgctaaaacctacgaacagactttgcaaatgcaaaatctgcag
acaactattgcccaaactcattctcaagacaaacctaaactgcatttaaaaggacttgtt
ggttcttcattttcattcgtaatttcgagtatttttaaacaagcagacaaaccatttttg
cttgtttttaacgataaagaagaagcggcattttatttaaacgacctagaacagctttgc
ggagataaagatgtattgttctatccaggaagctaccgtagaccataccaaatagaagaa
accgataatgcgaatgtattgttacgggcagaggttttaaaccgcataaactcacagaaa
aaaccggcaataatagttacttatccagatgcgcttttcgaaaaagtagtcactagaaag
gagctggagcggaatacgttaaaagtaggagttggcgataatttgtctatagactttgta
aacgaagtcttgttcgaatatcaatttaaacgtgtcgattttgtatcagagccaggagag
ttttcggtacgaggtgggatagtagatgtattttcgttttcgcacgacgaaccgtttaga
attgagttttttggagatgaagtagatagtattcgaaccttcgatgtagaaacacaactg
tctatagaccaaattaaaaagattaacattattcctaatgtagctaacaagtttctggaa
gaaaagcgacaaagtttttttaaatacattgctcagaaaacagtaatatgcctaaaaaat
gtcgatttactcttttcaagaatcgatgatttttacggtaaagcggaagaagcgttcaaa
acgctttcaaaagatattaaacacgccgagccaaacgaactgttctgtaattcacaacta
ttaaaagaacaattattaaatttttcaattattgagtttggtagttctactactatgtcg
agtgcaaaagatacatctctctctattgaatttaatactaaaccacagccatcattcaat
aaacaattcaatcttttaatagaggatttaattgcaaatcataacaaaggatttaccaac
tatatagcatgcgttagcgagcaacaagcgaaacgttttcatgatattttcgaagatatt
agtgcagataaaagtatagatgatgaggtacattataaaacaattgttttgtccttacac
caagggtttatagatcatgataataaaattgtatgctatacagatcatcaaatttttgag
cgttatcataaatttcatcttaaaagcggttatgctaaaaagcaagctataacactaaaa
gaacttactaatttagatattggcgattatgtaacccatatcgatcatggtattgggcgt
tttggaggtttacaaaaaatagatgtagaaggtaaaaaacaagaagctataaaattggtt
tatggtgaacgggacgtactgtatttaagcattcactcgttacacaaaatcaccaaattt
aatggtaaagatgggaaaccacctaaaatatataaactaggtagcaatgcctggaaaacc
ttaaaacagaaaaccaaagcccgtgtaaaacatgtggcatttaacctgataaaattatac
gcgaaacgtaaaacagagaagggttaccagtacaacccagatagctacatgcaacatgag
ttggaagcctcctttatttacgaagacacaccagatcaaagtacagctactgcagatatt
aaagccgatatggaaagcgagcgcccaatggacagactggtttgtggcgatgttggtttt
ggtaaaacagaagtcgctattcgtgcagcattcaaggcggtcgataacggtaaacaagtt
gcagttttagtgccaacaactatattggcatatcagcattatagaacgtttagggggcga
ttaaaggattttcccgtaacggtagattatgtaaaccgatttagaacaggtaaggagaaa
agagaaaccctagaagggttagaaaaaggaactgtagatattattataggaacacatcaa
ctcgtaaataaaaacgtaaagtttaaagatttagggttgctcgttgttgatgaagagcaa
aagtttggagtagccgtaaaggaaaaactaaaaactataaaagataatgttgatgtatta
acacttaccgcaacaccaatacctagaacacttcagtttagtttaatggcggccagggat
ttatcggttataacaacaccgcctccaaaccgttatccaatagaaagtcatgtcattcgt
ttcaatgaagatgctattcgtgatgccgttagttatgaaattgaacgtggcggacaaata
ttttttatccataaccgtattgaaaatattaaagaagtagcaggcatgatccagcgtttg
gtgccagatgctaaaattggtataggacatggacaattggacggaaaaaaattagaacaa
cttatgttggcatttatggatggtgcctttgatgttttggttagtacgactatagttgaa
agcggacttgacgtaccaaatgccaatactatttttattaataatgcgaataactttgga
ttaagtgatttgcatcaaatgcgaggacgtgtaggacgaagtaataaaaaagcattttgt
tattttattacaccagaatattctgctatgaccgatgatgccagaaagcgtattactgct
ctagaacagtttaccgaactgggaagtggctttaacatagccatgaaggatttagagatt
cgcggagcgggggatttacttgggggtgaacaaagtggctttataaacgaaataggattt
gacacctatcaaaaaatattaaatgaagccatagaagaacttaaagaaaatgagtttaaa
gacttgtataatgaagatgaagaagataaggtttatgtaaaagaagtaacgatcgatacc
gattttgaattactcttcccagataattacgttaataacattgcagagcgactaaactta
tacacacaacttaataatttaaaaacagaagaagagttaagtatttttaagtcggagtta
ttagatcgttttggggaattaccagagcaagtgaccgatttgttaaatagtgtccaaatt
aagtggatagctactaaaataggcttcgaaaaagttattatgaaacaaggaaaatttata
ggttattttattaatgatcagcaaagcagtttctatcaaagtagtaactttacaaaagtt
ttaaagtttgttcaaacacatccgaacgattgtaaaatgaaagaaaaacaaacccgaaac
ggattgcgtttaatgctttcgttcgataatgtaaaatcggtagagcaagcactaaaagta
ttaaagccaatcgtggcttag
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