Flavobacterium endoglycinae: J0383_00790
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Entry
J0383_00790 CDS
T08015
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fen
Flavobacterium endoglycinae
Pathway
fen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J0383_00790 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fen03400
]
J0383_00790 (ligD)
Enzymes [BR:
fen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J0383_00790 (ligD)
DNA repair and recombination proteins [BR:
fen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J0383_00790 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QSW89364
LinkDB
All DBs
Position
192330..194918
Genome browser
AA seq
862 aa
AA seq
DB search
MSLSKYQQKRDFKQTREPKGEIEKSANELIFVVQKHAASHLHYDFRLEMDGVLKSWAVPK
GPSMDPEVKRLAMMVEDHPYSYKDFEGTIPEGNYGAGNVIVWDNGTYTSDEKTASDEKQL
LSDLKKGRLSFILKGKKLKGEFSLVKLHGKQENAWLLIKKDDKYADSDIDILEKDKSVIS
KRSLEQLEEKSKKAASKAEKTTAKPVETTSAKTKTSKKSEKAEFLKPMLASVKEKPFDDE
EWIFEKKYDGYRTIAVINRHEVELLSRNEISFNANFKPIAEELKKLDHTVVLDGEVVVEN
DAGRADFQLLQNYMKTGIGNLKYYVFDLLNLDGNIITELSLLERKELLKILFNKYDFSNI
HYSEHTIGDGIKQFEKAAKNKTEGIIAKKADSTYTVNRRSSNWVKIKTANEEEAIIIGIT
EPKNSRKYFGAILLGQYDGKTLTYIGKCGTGFTETVLKDLYTQLKPYFIDKSPLNEKVPL
RDKIQWVKPKVVCQVKFSEWTQDQNLRHPVYLGIRIDKKAEEVFLSSPNQNKTQLNPEEM
IDLKDHKTEIKTENDYDLKVGKTVLHLTNQNKVYFPKDNITKGDIIHYYDEVSSLILPYL
KDRPESMNRFPNGIDGPSFYQKDVDVDKIPSWLKTKKVFSESNNANIDYLICNNKETLLY
MANLGCIEMNPWNSTIKHIHNPDWLVIDLDPADDDFTKVVKTALVVKEVLDELETECLCK
TSGASGLHIYIPLGAQYDYDSIKILGELIAQEVQSRIPDITSIERSIKKRKNKLYIDFLQ
NRRGQTLAAPYSVRPKPGATVSTPLEWSEVNDKLHPSQFTIKNVLKRFEKKGDLWTPVLS
KGANIKKIIHKLEENQNELKSN
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgtctaaataccaacaaaaaagagattttaaacaaacccgcgaaccaaaaggg
gaaattgagaaatcagcaaacgaattgatttttgtggtgcagaaacacgccgcatcgcat
cttcattacgattttaggttagaaatggatggtgtacttaaaagctgggctgtgccaaaa
ggaccgtcaatggatccagaagtaaaacgtctggctatgatggtagaagatcatccgtac
agttataaagattttgaaggcacgattcctgaaggaaattatggtgccggaaatgtgatt
gtttgggataatggaacgtatacttctgatgaaaaaacggcttcagacgaaaagcagtta
ttaagcgatttaaaaaaagggcgtctgagttttattctaaaaggaaaaaaacttaaaggc
gaattttcattggtcaaacttcatggaaaacaggaaaatgcgtggcttttgattaaaaaa
gacgataaatacgctgattcggatattgatattttagaaaaagacaaatccgttatttcg
aaaagaagtctggaacaattggaagaaaaatccaaaaaagcagcttcaaaagccgaaaaa
actaccgcaaaaccagttgaaacaacatctgctaaaacaaagaccagcaaaaaatctgaa
aaagccgaatttttaaaacccatgcttgcttctgtaaaagaaaaaccttttgacgatgaa
gaatggatttttgaaaagaaatatgatggctatcgaactattgccgttattaatcggcat
gaagtagaattattgagcagaaatgaaatttcatttaatgcgaatttcaagcccattgcc
gaagaattaaaaaaattagatcataccgtagttctggacggtgaggttgtagtagaaaat
gatgccggaagagccgattttcaactccttcaaaactatatgaaaactggaattggaaac
ttaaaatattacgtttttgatttactcaatttagacggaaatatcataaccgaattgtcg
cttttagaacgaaaagaactcctgaagattctttttaataaatacgatttttcgaatatt
cattattctgaacacacgattggcgacggtattaaacagtttgaaaaagccgctaaaaac
aaaaccgaaggaattattgctaaaaaagccgacagcacttacaccgttaatagaagaagc
agcaattgggtgaaaataaaaacagccaacgaagaagaagccattattattggaattaca
gaacctaaaaattcccgaaaatattttggcgccattctgcttggacaatatgatggcaaa
acgctaacatatattggaaaatgcggtacgggatttacagaaactgttcttaaagacctt
tacacgcagcttaaaccgtattttatagataaatctccgcttaacgaaaaagtaccttta
cgcgataaaattcaatgggttaaaccgaaagtcgtttgccaagtgaaattttcagaatgg
acacaagaccagaatttaagacatccggtttatctcggaatccgaattgataaaaaggca
gaagaagtttttttatcctctccaaatcaaaacaaaacacaactcaatcctgaagaaatg
atagatttaaaagaccataaaacggaaatcaaaacagaaaatgattatgatttaaaagta
ggaaaaacagttctgcatcttaccaatcaaaacaaagtttattttccgaaggacaatatt
accaaaggcgacattattcactattatgatgaagtttcttcgttgattctgccctattta
aaagaccgtccagaatcgatgaaccgctttcctaacggaattgacggtcctagtttttat
cagaaagacgttgatgtcgataagattccgtcgtggctgaaaaccaaaaaagtcttttca
gaatcgaataatgccaatattgattatttgatctgcaacaacaaagaaacattgctttat
atggccaatttaggctgtatagagatgaatccgtggaactctactatcaaacatattcac
aatcctgattggctggttattgatttagatcctgcagatgatgattttacaaaagttgta
aaaacagctcttgtcgttaaagaagttttagacgaactggaaaccgaatgtttatgcaaa
acttctggagcttctggacttcacatttacattccgcttggagcgcagtatgattatgac
tctattaaaattttaggcgaattaattgcccaggaagtccaatctcgaattccggatatt
acttcgattgaacgaagcattaaaaagagaaaaaacaaactgtatatcgattttctacaa
aaccgtcgcggacaaactttggcagcgccttattcagtgcgtccaaaaccaggtgcaact
gtttcaactccgttggaatggagcgaggtgaatgataaactgcatccttctcaatttacc
attaaaaatgtgctgaaacgttttgagaaaaaaggcgatttatggacgcctgttttatca
aaaggtgccaatattaaaaagatcattcacaaattagaagaaaatcaaaacgaattaaaa
tccaattaa
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