Ferrovibrio terrae: FNB15_06865
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Entry
FNB15_06865 CDS
T06089
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fer
Ferrovibrio terrae
Pathway
fer03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FNB15_06865 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fer03400
]
FNB15_06865 (ligD)
Enzymes [BR:
fer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FNB15_06865 (ligD)
DNA repair and recombination proteins [BR:
fer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FNB15_06865 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QDO97010
UniProt:
A0A516H093
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All DBs
Position
1404617..1407337
Genome browser
AA seq
906 aa
AA seq
DB search
MPAFVAQDFCVTERSLAGGIQTYNKKRDFRKTAEPRGEVGKPSKGLPKFVIQKHDASHLH
YDFRLEIGGVLTSWAIPKGPSLDPGEKRLAVRTEDHPMKYGSFEGTIPEDEYGGGTVMLW
DQGTYKPAGNPREGLKKGDLKFELRGKRLRGSFVLARMRPRGNEKRENWLLIKHRDATAR
PGSKDAVVKEHTESVETARAMTEIAEGEAVWHSSRTGAKKTGKTTSRKLKEEKAVAPPKR
RIASVDVAKLKGAKKGPLPAKISPQLATLVEEPPPGKGWISEIKFDGYRMVARINNGKVK
IYSRNGNVWTTRLPTIAKSLARLKVKQAWLDGEIVVLDDEGKSNFSKLKDALGGEDQRSI
FFFAFDILYLDGYNTAGCSQIDRKRLLDSVLGDTPPAFIRYSDHMAEAPEAIQHRACQMH
LEGIIVKQADAPYRQARTRNWLKLKCVQREEFVVIGYTDPQGTRTGFGALHLGYYDKGGE
LHYAGGVGTGFNTKKLVAMEKTLSKMTRRIPPAIWIHGEKPPAKMHWVRPEMVVETQFID
WTGAGSVRHAVFMGIRDDKQATDVVRDPPTEAKSRFSGTGTIVRAAKAKPKTKKAKTPPK
ARKDVPEIIDNRGADDGAVRLTHPDRILWPRQKLTKQDLADYWERAAVFALPFIANRPLA
LVRTPDGIDGEQFFQKKISRGFPKQILDLELEGEQLIAIDGLDGFQALAQMSAIELHPWG
SSIEDISAPDVIVMDLDPDAGLDFEDVIQAARDLRDALKSVGLTAFCKTTGGKGLHVVVP
FQPELGWDEVKAFARSIATAFATSDPKRFTDTLAKKARKGRIFIDYLRNGRGATAVAPFS
PRARPGATIAMPLTWTQVKPGLDPADYTIQLSEKQLRAGAAAWKEYFDVQKKQRITAKMQ
RAFKSI
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
ataccagcgtttgttgcacaggatttctgtgtaacggagcggagcttggccggcggcatt
cagacctacaacaagaaacgcgatttccggaaaacggcggagccgcgcggcgaggtgggc
aagccctcgaagggcctgccgaaattcgtcatccagaaacacgatgcctcgcatctgcat
tacgacttccgcctcgaaatcggcggcgtgctgaccagctgggctatcccgaagggcccg
agcctcgatcccggtgaaaagcgcctcgcggtgcgcaccgaagaccatccgatgaaatac
gggtcgttcgagggcaccatccccgaagacgaatatggcggcggcacggtgatgctgtgg
gatcagggcacctacaagccggccggcaatccgcgcgagggcctgaaaaagggcgacctg
aaattcgaactgcgcggcaaacggctgcgtggcagtttcgtgctggcccgcatgcgcccg
cgcggcaacgaaaagcgcgagaactggctgctgatcaagcatcgcgacgccacggcacgg
ccgggcagcaaggatgccgtggtcaaggagcataccgagtccgtcgagaccgcccgcgcg
atgacagagatcgccgagggcgaggccgtctggcattccagccggacaggtgcgaagaag
accggcaagacgacatcccgcaagctgaaagaggaaaaggccgtcgcacctccgaagcgg
cgtatcgccagtgtcgatgtggcgaaactgaaaggtgcaaagaagggccccctgccggcg
aagatttcgccacagctcgcgaccctggtggaggagccgccaccgggcaagggctggatc
agcgagatcaagttcgatggctaccgcatggtggcgcgcatcaacaacggcaaggtgaaa
atctacagccgcaacggcaatgtctggaccaccaggctgccgaccatcgccaaatcgttg
gccaggctgaaggtgaagcaggcctggctcgatggtgaaatcgtcgtgctggacgatgag
ggcaagagcaatttcagcaagctgaaagatgccctgggaggcgaagaccagcgcagcatc
ttcttcttcgccttcgatatcctgtatctcgatggctacaacaccgcgggctgcagccag
atcgaccgcaagcggctgctggactccgtgctgggcgatacgccgccagctttcattcgc
tacagcgatcatatggccgaggcaccggaggcgatccagcaccgcgcctgccagatgcat
ctggaaggcatcatcgtcaagcaggcggatgcgccttaccggcaggcgcgcacgcgcaac
tggctgaagctgaaatgcgtgcagcgcgaagaattcgtcgtgatcggctacaccgatccg
cagggtacgcgtaccggcttcggtgcgttgcatctgggctattacgacaagggtggcgaa
ctgcattacgccggcggcgtcggcaccggcttcaacacgaagaagctggtggcgatggaa
aagacgttgtcgaaaatgacgcggcgcattccgccggcgatctggattcatggcgagaaa
ccacccgccaaaatgcactgggtacggcccgagatggtggtggagacccagttcatcgac
tggaccggggccgggtcggtgcgccatgcggtctttatgggcatccgcgacgacaagcag
gccacggatgtggtgcgcgatccgccgacggaagcgaaaagccggttcagcggcaccggc
accattgtgcgcgccgccaaagccaagccgaagacgaagaaagccaagacgccgccgaag
gcgcgcaaggacgtgccggagatcatcgacaaccggggcgccgacgatggcgcggtgcgg
ctgacccatcccgacaggattctctggcccagacagaagctgaccaagcaggacctggcc
gactactgggagcgggcggcggttttcgccttgcccttcatcgccaaccgcccgctggcg
ctggtgcgtaccccggacggcatcgacggcgagcagtttttccagaagaaaatcagccgc
ggctttccgaagcagattctcgatctggaactggagggcgagcagctcatcgccatcgac
gggctggacggatttcaggcgctggcgcagatgtcggccatcgaactgcatccctggggc
agcagcatcgaggacatctccgcaccggatgtcatcgtcatggacctcgatcccgatgcc
ggcctcgacttcgaggatgtcatccaggccgcgcgcgacctgcgcgatgcgctcaagtcg
gtcgggctgaccgccttctgcaagaccaccggcggcaaggggctgcatgtcgtcgtgccc
ttccagcccgaactcggctgggatgaggtgaaggccttcgcccgctcgatcgcgaccgcc
tttgccacctccgatccgaagcgcttcaccgatacgctggcgaaaaaggcgcgcaaggga
cgcatcttcatcgactatctgcgcaacggccgcggtgcgacggcggtggctccgttcagt
ccgcgcgcgcggcccggcgccacgattgccatgccgctgacatggacgcaggtcaaaccc
ggcctcgatccggccgactacaccatccagctttccgaaaagcagctgcgcgccggcgcg
gcggcctggaaagagtatttcgacgtgcagaaaaaacagcgcatcaccgccaagatgcag
cgcgcgttcaagtccatctag
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