KEGG   Ferrovibrio terrae: FNB15_06865
Entry
FNB15_06865       CDS       T06089                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fer  Ferrovibrio terrae
Pathway
fer03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fer00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FNB15_06865 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fer03400]
    FNB15_06865 (ligD)
Enzymes [BR:fer01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FNB15_06865 (ligD)
DNA repair and recombination proteins [BR:fer03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FNB15_06865 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QDO97010
UniProt: A0A516H093
LinkDB
Position
1404617..1407337
AA seq 906 aa
MPAFVAQDFCVTERSLAGGIQTYNKKRDFRKTAEPRGEVGKPSKGLPKFVIQKHDASHLH
YDFRLEIGGVLTSWAIPKGPSLDPGEKRLAVRTEDHPMKYGSFEGTIPEDEYGGGTVMLW
DQGTYKPAGNPREGLKKGDLKFELRGKRLRGSFVLARMRPRGNEKRENWLLIKHRDATAR
PGSKDAVVKEHTESVETARAMTEIAEGEAVWHSSRTGAKKTGKTTSRKLKEEKAVAPPKR
RIASVDVAKLKGAKKGPLPAKISPQLATLVEEPPPGKGWISEIKFDGYRMVARINNGKVK
IYSRNGNVWTTRLPTIAKSLARLKVKQAWLDGEIVVLDDEGKSNFSKLKDALGGEDQRSI
FFFAFDILYLDGYNTAGCSQIDRKRLLDSVLGDTPPAFIRYSDHMAEAPEAIQHRACQMH
LEGIIVKQADAPYRQARTRNWLKLKCVQREEFVVIGYTDPQGTRTGFGALHLGYYDKGGE
LHYAGGVGTGFNTKKLVAMEKTLSKMTRRIPPAIWIHGEKPPAKMHWVRPEMVVETQFID
WTGAGSVRHAVFMGIRDDKQATDVVRDPPTEAKSRFSGTGTIVRAAKAKPKTKKAKTPPK
ARKDVPEIIDNRGADDGAVRLTHPDRILWPRQKLTKQDLADYWERAAVFALPFIANRPLA
LVRTPDGIDGEQFFQKKISRGFPKQILDLELEGEQLIAIDGLDGFQALAQMSAIELHPWG
SSIEDISAPDVIVMDLDPDAGLDFEDVIQAARDLRDALKSVGLTAFCKTTGGKGLHVVVP
FQPELGWDEVKAFARSIATAFATSDPKRFTDTLAKKARKGRIFIDYLRNGRGATAVAPFS
PRARPGATIAMPLTWTQVKPGLDPADYTIQLSEKQLRAGAAAWKEYFDVQKKQRITAKMQ
RAFKSI
NT seq 2721 nt   +upstreamnt  +downstreamnt
ataccagcgtttgttgcacaggatttctgtgtaacggagcggagcttggccggcggcatt
cagacctacaacaagaaacgcgatttccggaaaacggcggagccgcgcggcgaggtgggc
aagccctcgaagggcctgccgaaattcgtcatccagaaacacgatgcctcgcatctgcat
tacgacttccgcctcgaaatcggcggcgtgctgaccagctgggctatcccgaagggcccg
agcctcgatcccggtgaaaagcgcctcgcggtgcgcaccgaagaccatccgatgaaatac
gggtcgttcgagggcaccatccccgaagacgaatatggcggcggcacggtgatgctgtgg
gatcagggcacctacaagccggccggcaatccgcgcgagggcctgaaaaagggcgacctg
aaattcgaactgcgcggcaaacggctgcgtggcagtttcgtgctggcccgcatgcgcccg
cgcggcaacgaaaagcgcgagaactggctgctgatcaagcatcgcgacgccacggcacgg
ccgggcagcaaggatgccgtggtcaaggagcataccgagtccgtcgagaccgcccgcgcg
atgacagagatcgccgagggcgaggccgtctggcattccagccggacaggtgcgaagaag
accggcaagacgacatcccgcaagctgaaagaggaaaaggccgtcgcacctccgaagcgg
cgtatcgccagtgtcgatgtggcgaaactgaaaggtgcaaagaagggccccctgccggcg
aagatttcgccacagctcgcgaccctggtggaggagccgccaccgggcaagggctggatc
agcgagatcaagttcgatggctaccgcatggtggcgcgcatcaacaacggcaaggtgaaa
atctacagccgcaacggcaatgtctggaccaccaggctgccgaccatcgccaaatcgttg
gccaggctgaaggtgaagcaggcctggctcgatggtgaaatcgtcgtgctggacgatgag
ggcaagagcaatttcagcaagctgaaagatgccctgggaggcgaagaccagcgcagcatc
ttcttcttcgccttcgatatcctgtatctcgatggctacaacaccgcgggctgcagccag
atcgaccgcaagcggctgctggactccgtgctgggcgatacgccgccagctttcattcgc
tacagcgatcatatggccgaggcaccggaggcgatccagcaccgcgcctgccagatgcat
ctggaaggcatcatcgtcaagcaggcggatgcgccttaccggcaggcgcgcacgcgcaac
tggctgaagctgaaatgcgtgcagcgcgaagaattcgtcgtgatcggctacaccgatccg
cagggtacgcgtaccggcttcggtgcgttgcatctgggctattacgacaagggtggcgaa
ctgcattacgccggcggcgtcggcaccggcttcaacacgaagaagctggtggcgatggaa
aagacgttgtcgaaaatgacgcggcgcattccgccggcgatctggattcatggcgagaaa
ccacccgccaaaatgcactgggtacggcccgagatggtggtggagacccagttcatcgac
tggaccggggccgggtcggtgcgccatgcggtctttatgggcatccgcgacgacaagcag
gccacggatgtggtgcgcgatccgccgacggaagcgaaaagccggttcagcggcaccggc
accattgtgcgcgccgccaaagccaagccgaagacgaagaaagccaagacgccgccgaag
gcgcgcaaggacgtgccggagatcatcgacaaccggggcgccgacgatggcgcggtgcgg
ctgacccatcccgacaggattctctggcccagacagaagctgaccaagcaggacctggcc
gactactgggagcgggcggcggttttcgccttgcccttcatcgccaaccgcccgctggcg
ctggtgcgtaccccggacggcatcgacggcgagcagtttttccagaagaaaatcagccgc
ggctttccgaagcagattctcgatctggaactggagggcgagcagctcatcgccatcgac
gggctggacggatttcaggcgctggcgcagatgtcggccatcgaactgcatccctggggc
agcagcatcgaggacatctccgcaccggatgtcatcgtcatggacctcgatcccgatgcc
ggcctcgacttcgaggatgtcatccaggccgcgcgcgacctgcgcgatgcgctcaagtcg
gtcgggctgaccgccttctgcaagaccaccggcggcaaggggctgcatgtcgtcgtgccc
ttccagcccgaactcggctgggatgaggtgaaggccttcgcccgctcgatcgcgaccgcc
tttgccacctccgatccgaagcgcttcaccgatacgctggcgaaaaaggcgcgcaaggga
cgcatcttcatcgactatctgcgcaacggccgcggtgcgacggcggtggctccgttcagt
ccgcgcgcgcggcccggcgccacgattgccatgccgctgacatggacgcaggtcaaaccc
ggcctcgatccggccgactacaccatccagctttccgaaaagcagctgcgcgccggcgcg
gcggcctggaaagagtatttcgacgtgcagaaaaaacagcgcatcaccgccaagatgcag
cgcgcgttcaagtccatctag

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