Formica exsecta (narrow-headed ant): 115246366
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Entry
115246366 CDS
T07422
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
fex
Formica exsecta (narrow-headed ant)
Pathway
fex03013
Nucleocytoplasmic transport
fex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115246366
03015 mRNA surveillance pathway
115246366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fex03019
]
115246366
Enzymes [BR:
fex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115246366
5.6.2.5 RNA 5'-3' helicase
115246366
Messenger RNA biogenesis [BR:
fex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115246366
mRNA cycle factors
Common to processing body (P body) and stress granule
115246366
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
Helicase_RecD
ATPase
AAA_16
nSTAND3
SRP54
AAA_22
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
115246366
NCBI-ProteinID:
XP_029680997
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MVRISTRSSQTLTFLDTEETDLIGADTQGSEFDFSTSTLPSQSQTQASQHDATQTQSSQP
VQVNGTNGTSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPEYACKYCGIHEASCVVMC
NVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCATRNVFVLGFI
PARADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLSWLVKIPSEQEQLRARQI
SAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KRLKESQTQENIEVRWDVGLNKKTIAYFLLAKTDGDMKLMHGDELRLRYLGELHKPWSGI
GHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQSALRKFAVDDTSV
SAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTG
KTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPVS
FLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCTC
VGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKIDF
PWPAVDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKPK
KLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGMQNHNPYYQRNVPLDIFSRTH
DTISYISPERAQAAMNNMPVPLGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGAAALVR
NKSGPRMGKLNSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAV
GEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgaatatcgacgcgtagcagccagaccctcacgtttctcgacaccgaggagacg
gacctgatcggcgcggatactcagggcagcgaattcgacttctcgacttcaacgttgccg
tcgcagagtcagacccaggcctcgcaacacgacgcgacccagacacagtccagtcaaccc
gttcaggtaaatggaacaaatggtacttcatcgttggatttaaaaatttctggagcagcc
caaagccttgccgagttgcaatttgaggaagaggaagaggaagcatattataatcgtgat
ttacctgaatatgcatgtaaatattgcggtatccacgaggcatcatgcgtggttatgtgt
aatgtttgccgaaaatggttctgcaatggacgcggtaatacatcaggatcacatattatc
aatcatcttgttcgtgctaaacacaaggaagttacgttacacagagatggccctcttgga
gaaactgttttggaatgttattcctgtgctacaagaaatgtttttgtattgggttttatt
cctgctagagctgattctgtagttgtgctgctttgtcgccaaccatgtgcggcacagagt
tctttgaaagatatgaattgggatcaagagcaatggaaacctttgattgaagatcgtagc
tttttatcttggctagtgaaaattccatctgaacaagagcagttgagagctagacagatc
tcagcacagcagattaataaattggaggagttatggcgagacaacgtcgatgctactttc
caagatcttgaaaagcctggagtagatgaggaaccgcagcaagttttgttacgctatgag
gatggttatcagtatcaaaatatttttggtccgcttgtaaaattggaagctgattatgac
aaacggttaaaagaatctcaaactcaagagaatattgaagtacggtgggatgttggatta
aataagaagactattgcatactttttgctagctaaaacggatggtgatatgaaattgatg
catggagacgaattgagactccgttacttgggagaacttcataaaccttggtccggaatt
ggacacgtgattaagatcccggataattacggggaagaagtcggaattgaattgaaaaat
aattctggagcgccaacagaatgcgtcagtaacttcgttgttgatttcatttggaagagt
acgagttttgatagaatgcagtctgcattacgcaagtttgctgttgatgacacatccgta
tcggcttacatatatcatagactactaggtcatgaagtagaagaagttttgttccgttgt
catctccctaagcactttagtgcgccaaatttacccgatttgaatagatcgcaggtgtac
gctgtaaaacatgcaatacaacgacccttgtctttgattcaaggaccacctggaacaggt
aaaaccgtaacgagtgctaccatagtttatcaattggtaaaacaaaacggtggtccagtt
cttgtatgcgctccttccaatactgctgtcgatcaattaaccgagaagatacataaatca
aatctgaaagtcgtacgattatgtgccaaatcacgagaggccattgattcgccggtgagt
ttcctcgcattgcataatcagataaaaaacatggagacgaatactgaattgcaaaagtta
caacaattgaaggacgagactggcgaactttcaagcgttgatgaaaaacgttatagactc
ttgaagaaagcggcggaaaaggagcttctggaagcagcagatgtaatttgctgcacatgc
gtaggcgctggtgatcctagattgcatcgattaaagtttcattctatacttatcgatgag
agtatgcaggctaccgaaccggagtgcatggtgcctgtcgttttaggagcgaagcaattg
atccttgttggtgatcactgtcaattgggtccagtggtgatgtgtaaaaaagccgccaga
gctggtttgtcacaatctctgtttgaaagactggtggtgttgggaattagacctttccgt
ttggaagtacaatatcgtatgcatcctgatctttcgcgattcccatctaattttttctac
gaaggttccctgcagaatggcgtttgcgctgacgagagaaaattattaaagattgatttt
ccctggcctgcagtagacaaaccaatgttcttttatgtcacgcaaggtcaagaagagata
gccggaagcggaacatcctatttgaatcgtaccgaagcgtctaatgtggaaaaaataacg
acgcgattcttacgttgtggtgtaaagccggaacagatcggagtgataaccccatacgaa
ggtcagcgggcttatcttgtgcaatacatgcagtatcaaggttctctgcattcgaaactg
tatcaggaaattgaagtagcaagtgtggacgcttttcagggacgcgagaaagatataata
ataatgtcttgcgtacgatccaatgaacatcagggtattgggttcttgaatgatccccga
agattaaatgtggcgctgactcgcgcgaaatacggtatcatcattgtagggaaccctaag
gtactttcgaaacagccactctggaaccatctgctcagcttttacaaggagcaaaaggtg
ctggtcgaaggaccgttgaacaatctaaaggaatccatgatccaatttgctaaaccaaaa
aaactcgtgaacgcggccaacccaggttcgcatttcatgtccacgtcaatgtacgatgct
cgcgaagccttgattcctggatcagtatacgatcgctctggcacgcaggtgaacggcatg
cagaatcataatccatactatcagagaaacgtgccgctcgacattttcagtcgcacccac
gataccatcagctacatcagcccggaacgggcgcaggcggcgatgaacaacatgccggta
ccgctgggtatgttcatgaacatggcgcacgtgccgccacgcttttataatcaacatcaa
caggcgttgcaggcgcgtcagaatcaaagaaatcgacgtggtgccgccgctttggtaaga
aacaagtccggtccgcgtatgggtaagctgaatagtcaaacagaacaaaatacgcaaccg
tatagccaaccgggtctgccgctgacccagggtacgacgcagggtatgtctcagcccggc
ttcagtctctcgcagcctggtctcagtcaagcggagctctctcaggattcgttcgccgtt
ggtgaattccagtcccaaatggacggtctgctgtcgcaagactcaacctatcagggcgat
cgaagtggtttctatcaatcgggccaatcgcaagccggaggacaattctcgcaaccctac
tga
DBGET
integrated database retrieval system
