Flavobacterium faecale: FFWV33_04235
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Entry
FFWV33_04235 CDS
T05515
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ffa
Flavobacterium faecale
Pathway
ffa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ffa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FFWV33_04235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ffa03400
]
FFWV33_04235
Enzymes [BR:
ffa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFWV33_04235
DNA repair and recombination proteins [BR:
ffa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FFWV33_04235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWG20805
UniProt:
A0A2S1LAP7
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All DBs
Position
967844..971212
Genome browser
AA seq
1122 aa
AA seq
DB search
MSKAALYKTYDNLPKTVQIAKLLQDKKELKMHLKGLLGSSISFTIQSIFKKTALPFLLVL
ENKEEAAYFLNDLEQMVGEPDVLFYPASYRRPYQVDETDNANVLLRAEVLNRINSRKKPA
IVVTYPEALFEKVVTRKDLDKNTLKVSVGDKISIDFINEVLFEYEFKRVDFITEPGEFSV
RGGIVDVFSFSNDNPYRIEFFGNEVDSMRTFDVATQLSIEKQTKITIIPNVENKVFQENR
ESFLDYISEKTVLILQNTEGFLSQLDKQFAKAEEAFAKLNTEIKRAAPEQLFLNQPEFIK
RALDFSIVELASKPVFKATEKFEFHIQPQPSFNKQFDLLLNNLSENHFNGLTNYLFCSND
NQAKRFHDIFETLDESNSENIRKQYNTVVLPLYQGFIDTENQIACYTDHQIFERYHKFNL
KSGYSKKQNITLKELTALTVGDYVTHIDHGIGRFGGLQKIQVEGKTQETIKLVYADNDIV
YVSIHSLHKVSKYTGKDGTPPKIYKLGSNAWKVLKQKTKARVKHVAFNLIQLYAKRRLDK
GFAFAPDSYLQNELESSFIYEDTPDQYKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAI
RAAFKAVDNSKQVAILVPTTILAYQHYRTFTERLKDMPVSVGYLNRFRTAKQKAETLKQL
AEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANIDTLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIETNVVGFSEETIRDAISYEIQRNGQVFFINNRI
ENIKEIAGMIQRLVPNARVGIGHGQMDGKKLEELMLAFMNGEFDVLVATTIIESGLDVPN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTDDARKRIQALEQFNEL
GSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKENEFKDLYPEDN
DIETKEYVKDIQIDTDFELLFSDEYINNVSERYSLYNELGAVKNEEELMVFQNKLTDRFG
PMPPRAKALMNSIRIKWIASGIGIEKLVMKKGKMICYFVSDQQSDFYQTNRFRDILQFVQ
KNTGICKMKEKQTPAGLRLLLTFDNAKTTRNALELMEKLGGK
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaagcagcactatataaaacatacgataatttgcccaaaacggtgcaaattgcc
aaactattgcaagataaaaaagaactaaaaatgcatctcaagggattgctaggttcttct
atttcattcacaattcagtcaattttcaaaaaaacagccctcccctttttacttgtttta
gagaacaaagaggaagctgcttatttcttgaatgacttagagcaaatggtcggtgaaccc
gatgtattgttttacccagcatcttatcgccgtccgtaccaagtagacgagactgacaac
gccaatgttttgttacgtgcagaggtgcttaaccgcattaattcgcgcaaaaaacccgca
attgtagtcacctaccccgaggcattgttcgaaaaagtggtcactcgtaaagatttagac
aaaaacacattaaaagttagcgtaggcgataaaatttcgatcgattttatcaacgaagtc
ttattcgaatatgaatttaaaagagtggattttattaccgaacccggagaattttcggtt
cgtggtggtattgtcgatgttttttcattttcgaatgataatccgtatcgaatcgaattt
tttggaaacgaagtggatagcatgcgtaccttcgatgtagccacacaactttcgatagaa
aaacaaactaaaatcacgatcattcctaatgttgaaaataaggtttttcaagaaaacaga
gaatcatttttagattatatttcagagaaaaccgttttaattcttcaaaacacagaagga
tttttatcacaacttgacaagcagtttgccaaagccgaagaagctttcgcaaaattaaat
accgaaatcaagcgcgctgcacccgagcaattgttcttgaaccaacccgaatttattaaa
cgtgctttggatttttcgattgtagaattagcttcgaaacctgtttttaaggccaccgaa
aaattcgaatttcatattcagccgcaaccgtctttcaataagcaatttgatttgttgctg
aataatttgagtgaaaatcattttaatggtttgactaattatttattttgttcgaatgac
aatcaggcaaaacgattccacgacatcttcgagactttggatgaaagcaattctgagaac
attcgaaaacaatacaatacagtggttttaccattgtaccaaggttttattgataccgaa
aaccaaattgcttgctatactgaccaccagatttttgagcgttaccataaattcaacctc
aaaagtggctattcgaaaaagcaaaacattactttaaaagagcttaccgccttaaccgtt
ggggattatgtaacacacattgaccacggaattggaaggtttggtggtttgcaaaaaata
caagtagaggggaaaacccaagaaactatcaaacttgtctatgctgataatgacattgtg
tatgtgagcattcactcgctacacaaagtgtcaaaatatactggaaaagacggaacgcca
ccaaaaatttataagttaggctcgaatgcctggaaagttttaaaacaaaaaaccaaagcc
agagtcaagcatgtagccttcaatttgattcagctatacgccaaaagacgtttggacaaa
ggctttgcttttgctccagacagctatttgcaaaacgaattggaaagttcgtttatctac
gaagatacacccgaccaatacaaatcgactcaagaagtcaaagccgacatggaaagcgat
cgcccgatggaccgattggtttgtggtgatgtaggttttggaaaaacggaggtagcgatt
cgcgccgctttcaaagcggtggacaatagcaaacaagtcgctatattggtgccgaccact
attttggcctaccaacattaccgaacattcaccgagcgattgaaagatatgcccgtgagt
gtgggttatttaaaccgttttagaactgccaaacaaaaagcagaaaccctgaagcaattg
gccgaaggcaaactagatatcgttattggaacccaccaattggtgaacaaaaatgtcgtt
ttcaaagatttaggtttattgattgtggatgaggagcaaaaatttggtgtgaatgtcaaa
gacaaactcaaaaccattgccgctaatatcgatactttgaccttgacggcaacgccgatc
ccgagaaccttacaattctctttgatggcagcccgagatttatcggttattacgacacct
ccacccaatcgttatcctattgaaactaatgttgtcggttttagcgaagaaacaattcga
gacgcgatttcgtatgagattcagcgcaacggacaggtatttttcattaacaatagaatc
gaaaatattaaagaaatagctggtatgattcagcgactcgttcctaatgcccgcgtgggt
attggtcacggtcaaatggatggtaaaaaattagaagaattaatgttggccttcatgaac
ggggaattcgacgttttggtagcaacaacaattattgaaagtggtttggatgtacccaat
gccaataccattttcatcaacaacgctaacaatttcggactctcagacttgcaccaaatg
cgtggtcgtgtgggacgtagcaacaaaaaagccttttgttatttcatctgtcctccttac
tccgccatgaccgacgatgccagaaaacgtattcaagcattagagcagttcaatgaactt
ggaagcgggtttaatattgccatgaaggatttggagattcgtggtgctggagatttattg
ggtggtgaacaaagcggatttatcaacgaaattggattcgacacctatcaaaaaatcttg
aacgaagccattgatgagttaaaggaaaatgaattcaaagatttgtatccagaagacaac
gatattgagacgaaagaatatgtcaaagacattcaaatagacaccgattttgagctttta
ttctcagatgaatacatcaacaacgtttcggagcgatatagcttgtacaacgagctaggc
gcagttaaaaacgaagaagaactaatggtcttccaaaacaaactgacggatcgttttggt
ccaatgccaccacgtgcaaaagcattgatgaacagcatccgtattaaatggattgctagc
ggtattggtatcgaaaaactggtaatgaaaaaaggtaaaatgatttgctattttgtttct
gatcaacaatctgacttttaccaaaccaatcgttttagagatattttacagtttgtacaa
aaaaataccggtatttgtaaaatgaaagagaaacaaactcctgccggtttgcgcttgctc
ttgactttcgacaatgccaaaactactcgaaacgcattggagttaatggaaaaattgggt
ggaaaataa
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