Fusarium falciforme: NCS54_00535800
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Entry
NCS54_00535800 CDS
T09198
Name
(RefSeq) General transcription and DNA repair factor IIH
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ffc
Fusarium falciforme
Pathway
ffc03022
Basal transcription factors
ffc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ffc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NCS54_00535800
09124 Replication and repair
03420 Nucleotide excision repair
NCS54_00535800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ffc03021
]
NCS54_00535800
03400 DNA repair and recombination proteins [BR:
ffc03400
]
NCS54_00535800
Transcription machinery [BR:
ffc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NCS54_00535800
DNA repair and recombination proteins [BR:
ffc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NCS54_00535800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
77791307
NCBI-ProteinID:
XP_053006842
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All DBs
Position
4:complement(join(1972111..1972942,1973006..1973583))
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AA seq
469 aa
AA seq
DB search
MADSDGEYVADDMSDDDIMDHRVTDDDPKGAGGKPSRPHKKDRNATRAWEKSKRTWETNL
PEEDQDGLLSLTALEAEKRKRLLRDTTPLQRGIIRHLVLVLDMSFAMAEKDLLPTRYRLT
LRYAAAFVREFFEQNPISQLGIIGMRDGVAVRISDVGGNPAEHLERLKGLEDQDPQGNPS
LQNALEMCRGALFHAPSHGTREVLIIYGALLSSDPGDIHETVGNLITDRIRVSIVGLSAQ
VAICADLCSRTNAGDESQYNVAMDEVHFRELFLAATTPPVTRTAEQSTASLLMMGFPSRT
LVAGGDTSYCACHNRPFREGYLCTRCSARVCRLPAECPACGLTLILSTHLARSYHHLFPL
RNWVEVPWADAARSAACFSCQAPFPEPPKTKAPDKPKEDAGPKPAKGVSESGRYACEVCR
QHFCIDCDVFAHEVIHNCPGCQSIVQKTDGPVSAEPNGTAHTNGDVVMT
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggctgactccgatggcgagtacgtcgccgacgacatgtcggacgacgacatcatggac
caccgcgtcaccgacgacgaccctaaaggcgccgggggaaagccttcgcgaccgcataag
aaggatcgtaacgcgacccgggcctgggaaaagtcgaagcgcacctgggagacgaacctc
cccgaggaggaccaggacgggttgctgagcctgacggccctcgaggccgagaagcgcaag
cgcctgctccgcgacacgacaccgctgcagagaggcatcatccggcacctggtgctcgtg
ctcgacatgtcgttcgccatggcggaaaaggacctgctgcctacgcggtaccgcctcacg
ctgagatacgcagccgcctttgtccgcgagttctttgagcagaaccctatatctcagctt
ggaatcattggcatgcgcgacggtgttgcggtgagaattagcgatgttggagggaacccg
gctgagcacctggagcggttgaagggcttggaggatcaggacccccaaggtaacccgagt
ctgcagaatgctctggagatgtgccggggagctttgttccacgcgccatcgcatggcact
cgagaggtgcttatcatctacggcgccctgctatcgagcgacccgggcgacatccacgag
acggttggcaaccttattacggaccggatacgcgtgtccatcgtcggactgtcagcgcag
gtggcaatctgcgctgacctctgctcgaggacaaacgccggcgacgagtcgcagtataat
gtggccatggacgaggtgcacttccgtgagctcttcctcgccgccaccacgccccccgtc
acccggaccgctgagcagagcacggcaagcttactcatgatgggcttcccgtcccgtacg
ctcgtagccggtggcgatacaagctattgcgcctgtcataaccgacccttccgcgagggc
tacctatgcacacgctgctccgcccgtgtctgtcgcctccccgccgagtgtcctgcctgc
gggctcaccttgatcctctccacccatctcgctcgctcatatcatcacctgttcccttta
cggaactgggtcgaggttccctgggctgacgccgcccgctctgcagcctgcttctcctgc
caggcgccatttcctgaaccgccaaagacaaaggcccctgataagcccaaggaggacgca
gggcccaaaccggcaaagggcgtcagcgagagcggccgctacgcctgtgaggtgtgccgg
cagcacttctgcatcgactgtgacgtgtttgcccacgaagtcatccacaactgcccgggc
tgccagagcatagtccaaaagacggatggtcccgtatcggctgagccgaacggcacggcg
cacaccaacggcgatgtagtcatgacatag
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