KEGG   Fulvia fulva: CLAFUR5_00223
Entry
CLAFUR5_00223     CDS       T08195                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ffu  Fulvia fulva
Pathway
ffu03030  DNA replication
ffu03410  Base excision repair
ffu03420  Nucleotide excision repair
ffu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ffu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CLAFUR5_00223
   03410 Base excision repair
    CLAFUR5_00223
   03420 Nucleotide excision repair
    CLAFUR5_00223
   03430 Mismatch repair
    CLAFUR5_00223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ffu03032]
    CLAFUR5_00223
   03400 DNA repair and recombination proteins [BR:ffu03400]
    CLAFUR5_00223
Enzymes [BR:ffu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CLAFUR5_00223
    6.5.1.6  DNA ligase (ATP or NAD+)
     CLAFUR5_00223
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CLAFUR5_00223
DNA replication proteins [BR:ffu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CLAFUR5_00223
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CLAFUR5_00223
DNA repair and recombination proteins [BR:ffu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CLAFUR5_00223
   NER (nucleotide excision repair)
    Other NER factors
     CLAFUR5_00223
   MMR (mismatch excision repair)
    Other MMR factors
     CLAFUR5_00223
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 71980101
NCBI-ProteinID: XP_047757199
LinkDB
Position
1:complement(join(876937..879739,879828..880039))
AA seq 1004 aa
MLWSRCPLPRSFCRAIYRRDPSQVVLIAHQLPTPEPQATARDSRSLWKHWVVPRTDRTRI
GKMAPKQATLGKFFGSNGGPAAKPQQAKLKFSSKAEPKKEHEEEDVKAEASTPETNGTTK
HEDVEMDDVDTAKKEEDVSGDDAPVKKEPASSATPKKRRASEDGEDQADENDDEPPTKKQ
RQKPAPAGTKKGVAKKTNGKSKVKAVPAEDDDEVEEVKPAKKSKSPTPAKSDSKTSAKST
AKKQTIDLDDEDDEPVKKKPSKPEPKTKTPVKPKSKAAAVPVDEDDIDKNDEKQVGSESE
AEVSEDEEEVKPEVAAKAREKVQSTLKSSGKDPYPDWKAGDPVPYAALCTTFSKIEMTTK
RLEILAHCSLFLRQVLRLTPEDLLPTVLLMIGKLAADYAGIELGIGESLIMKAIGESTGR
SLKIIKDDQQKIGDLGLVAAKSRGNQPTMFNPKPLTVRGVHEGLMRIATVEGQGAQGRKV
DGIKKLLSSADVNMKKGEQIDINKDKGGPSESKFIIRALEGKMRLGLADKNLQVALSHAM
VAHEVSKDGKKVPTEEQLKKGEEVFKAVYNELPAYEVIVPALLENGIWKLRDSLKLRPGV
PLKPMLAKPTKSIGEVLDRFEGKDFTCEYKYDGERAQIHFVAHDAEQDFAATVAPAAGKS
DRGVSNIFSRNSEDLSKKYPDILERLPKWVKEGTKSFVLDCETVAWDVEKKHVLPFQQLM
TRKKKDVKTEDIKVKVCVFAFDILYLNGEAMVNKPFRERREAMYTAFDEVEGEFAFAQYG
NSREIEEIQTLLDDSIKASCEGLMVKMLDGVESHYEPSRRSQNWLKVKKDYLSGAGDSLD
LVVLGAYYGKGKRTNWYGAFQLACYNTSSEQYETVCNIGTGFSEALLAELYDTLSPLVID
RPKPFYDHSTGKNDQPDVWFEPKFVWEVKTADLTLSPRYRAASSEFGNDGTHKGVSLRFP
RFIRVRDDKNAEQATSSRQVAEMYRAQESVGKDKKPAADDDFEY
NT seq 3015 nt   +upstreamnt  +downstreamnt
atgctatggtctcgctgcccgctgccacgatcgttctgcagggcgatatatcgacgtgat
ccctcccaagtcgtcctcatcgcccaccagctgcccacgccagaacctcaggctacagca
cgggactcgagatcactttggaagcattgggtcgtacctcggaccgacagaacgcgaatt
ggcaagatggcgcccaagcaggccactctcggcaagttcttcggaagcaatggcggacca
gcagcgaagccacagcaagcgaagctgaagttctcgtccaaggccgagccgaagaaggag
catgaagaggaggatgtgaaagctgaggcatccacaccagaaacgaatggaaccaccaag
cacgaagatgttgaaatggatgatgttgacaccgcaaagaaggaggaggatgtctcgggc
gatgatgcaccagtcaagaaggagccggcctcatctgctacacccaagaagcgtcgagct
tcagaggatggcgaggatcaggctgatgaaaatgacgatgagcctccgaccaagaagcag
cgccagaaacctgctccagccggcactaagaagggcgtggcgaagaagacgaacggaaag
tccaaagtcaaggctgtgcctgcagaggacgatgatgaggtggaagaggtgaagcctgcg
aagaagtcgaagtcgcctacgcctgcaaagtcggacagcaagacttctgccaaatcgact
gcaaagaagcaaacgatcgatctagacgacgaagacgacgagcccgtaaagaagaagccg
tcaaagccagaacctaagacgaagacaccggtgaaaccgaagtcgaaggcagctgctgtt
cccgttgacgaggacgacatcgataagaatgacgagaaacaggttggcagtgagtccgaa
gctgaagtgtctgaagatgaggaagaagtcaagccagaagtggcagccaaagctcgtgag
aaggtccagagcactctcaaatcatctggcaaagacccgtatccggactggaaagctggt
gatcctgtgccatatgctgcgctatgcaccacgttctctaagatcgagatgaccaccaag
cgactcgagattctcgctcattgctcattgttcctacgacaagtgcttcgacttacaccc
gaagatctcctgcccaccgtactcctcatgattggcaaactcgcagccgactatgcaggt
atcgaacttggcattggagagtctctgatcatgaaggctatcggcgagagcacaggacgc
agcttgaagatcatcaaagatgaccagcagaagatcggcgacctgggacttgttgctgcg
aagagtcgtggcaatcaacctactatgttcaatccgaagcccttgactgtgcgaggtgtc
catgaaggcttgatgaggattgctactgttgaaggtcaaggcgctcagggtcgtaaagtc
gatggcatcaagaagctgttgtccagcgctgatgtcaacatgaagaaaggagagcagatc
gacatcaacaaggacaaaggtggcccgagcgagtcgaaattcatcatccgcgccctggaa
ggcaagatgagactgggcctggcagacaagaaccttcaggttgcgctctctcacgccatg
gtcgcacatgaagtgtccaaggacggcaagaaggtgcctaccgaggagcagctgaagaag
ggcgaagaggttttcaaagcagtctacaacgagttgccagcctacgaggtcattgtgcca
gcactactggagaacggcatctggaagcttcgcgactcactcaagctgcgacctggtgta
ccactgaagcccatgttggcgaagcccaccaagtccatcggtgaagtgctcgaccgcttt
gagggcaaggacttcacttgcgagtacaagtacgatggcgaacgtgcgcaaattcacttc
gttgcacacgatgctgagcaggactttgccgccactgttgctccggctgcaggaaagagc
gatcgtggtgtatcgaatatcttctcgcgaaacagtgaagacttgagtaagaagtacccg
gatattcttgaacgactgcccaagtgggtcaaggaggggacaaagagctttgtgctcgat
tgcgagaccgtcgcctgggatgtcgagaagaagcacgtactgcccttccaacagctcatg
acgcgcaagaagaaggacgtcaagacagaggatatcaaggtcaaggtctgcgtctttgcc
ttcgacatactgtacctgaacggcgaagctatggtcaacaagccattccgtgaacgtcgc
gaggctatgtacactgcttttgacgaagtcgagggagagttcgcgttcgcacaatacggc
aactctcgtgagatcgaagagattcagactctgctggatgactcgatcaaggcatcttgc
gaaggactgatggtcaagatgttagacggtgtcgaatcgcactacgagccatcacgccga
tcgcagaactggctcaaagttaagaaagattacctctcaggcgcaggcgactcgctggat
ctggtcgtccttggggcatactacggcaaaggcaagcggaccaactggtacggtgccttc
cagctagcctgctacaacactagctccgagcaatatgagactgtctgcaacatcggcact
ggcttctccgaagctctattagcggagctctacgacacactctcgccacttgtcatcgac
cgacccaagcccttctacgaccactccacgggcaagaacgaccagccagatgtatggttc
gagccgaagttcgtctgggaggtcaagaccgccgatctcacgctcagtccgagataccgc
gctgcgagttcagagtttggaaatgacggcactcacaagggcgtcagtctacgcttcccg
cgcttcattcgcgtgagagatgacaagaatgcggaacaggccacgagtagtcgacaggtg
gcggagatgtaccgcgcgcaggagtcggtgggcaaggataagaagccggctgctgatgat
gattttgagtactga

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