Fulvia fulva: CLAFUR5_03283
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Entry
CLAFUR5_03283 CDS
T08195
Name
(RefSeq) General transcription and DNA repair factor IIH subunit ssl1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ffu
Fulvia fulva
Pathway
ffu03022
Basal transcription factors
ffu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CLAFUR5_03283
09124 Replication and repair
03420 Nucleotide excision repair
CLAFUR5_03283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ffu03021
]
CLAFUR5_03283
03400 DNA repair and recombination proteins [BR:
ffu03400
]
CLAFUR5_03283
Transcription machinery [BR:
ffu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CLAFUR5_03283
DNA repair and recombination proteins [BR:
ffu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CLAFUR5_03283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
Motif
Other DBs
NCBI-GeneID:
71983161
NCBI-ProteinID:
XP_047757949
LinkDB
All DBs
Position
2:4535986..4537335
Genome browser
AA seq
449 aa
AA seq
DB search
MADSDPEYDEENGPSTGTQMASRPKGREKARWEASANSKLAYQEAAGGSIEDVLGGREEA
AKRKRLTKDTTPLQRGIIRHVILLLDFSEAMMEKDLRPTRYLLMLTYAKFFVREFIEQNP
ISQLGIVGMKDGLAIRVSDMSGNPEDHIAILGEYAKKEPKGNPSLQNGLDMARAALYHTP
SHGTREVVVIMGALLTSDPGDIYDTIKACIKDHIRVSIIGLAAQMHICAEICRKTNQGDE
TCYNVATDDVDFREQLMKSTTPPVMRSTDAEALRRNQANLLMMGFPSRIVEEKATLCACH
GQLTRGGYLCSRCGAKVCSLPATCPTCDLTLILSTHLARSYHHLFPLQNWAEVSWKRARQ
KGSVQCYGCLSGFPQVPAAHDTTQVEVQEQPRRKRAEGASESSRYECETCQNHFCIDCDV
AAHEVIHNCPGCMSTAHLPGVEATNGTST
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcagactcagatcctgagtacgacgaggagaatggtccatccacagggacgcagatg
gcgtctcgaccaaagggccgcgaaaaggccagatgggaagcctcagccaactcgaaattg
gcgtaccaggaagccgccggcggcagcatagaagatgtgctgggtggcagagaggaagca
gccaaacggaagcgactcactaaagacacaacgcctcttcaacgcggaatcatacgccac
gtcatattgctcttggacttttcagaagccatgatggagaaagatcttcgacctacgagg
tatctcctcatgcttacgtacgccaaattcttcgtgagagaattcatcgagcagaaccca
atctcgcagcttggcatagtaggcatgaaagatggcctagcaattcgagtcagtgacatg
tcgggcaacccagaagatcacatcgccatactgggagaatatgcgaagaaggagccgaaa
ggcaatccttctcttcagaatggcctggatatggctcgtgcagccctctaccacacgcct
tcccacggaacaagagaagttgtagtcatcatgggtgcccttctcacctcagatccaggc
gacatttacgacacgatcaaagcatgcatcaaagaccacatccgcgtcagcatcatcggc
ctcgcagcacaaatgcacatatgtgccgagatttgccgcaagacgaaccagggagacgaa
acgtgctataatgtcgcgactgacgatgtggacttcagagagcagttgatgaagtcaacc
acaccaccagtcatgaggtccacagatgccgaagcgctaaggcggaaccaggcgaatctt
ctcatgatgggctttccctcgcgaattgtcgaggagaaggcaacactctgcgcttgccat
gggcaattgacgcgtggaggctacctctgcagtagatgtggagcgaaagtctgcagcctc
ccggcgacctgcccgacctgcgacttgacgttgatcttgtctacccatctggcgcgatca
taccatcaccttttcccgctccagaactgggcagaggtgtcatggaagcgagcacgccag
aaaggaagtgtgcagtgctatggctgtctgtcaggatttccacaagtcccggcggctcac
gacacgacacaagtggaggttcaggagcaaccgcggcgcaagcgagcagaaggtgcctcg
gaatcgagcagatatgaatgcgagacatgtcagaaccacttctgcattgactgcgatgtg
gctgcacatgaggtgattcacaattgtcctgggtgcatgagtactgcgcacctgccagga
gttgaggcaacgaacggcacgtctacgtga
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