Fulvia fulva: CLAFUR5_03884
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Entry
CLAFUR5_03884 CDS
T08195
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ffu
Fulvia fulva
Pathway
ffu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CLAFUR5_03884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ffu03400
]
CLAFUR5_03884
Enzymes [BR:
ffu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CLAFUR5_03884
DNA repair and recombination proteins [BR:
ffu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CLAFUR5_03884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
DNA_ligase_A_C
BRCT
LIG3_BRCT
DNA_ligase_IV
TMEM232
Motif
Other DBs
NCBI-GeneID:
71983762
NCBI-ProteinID:
XP_047758766
LinkDB
All DBs
Position
2:complement(join(6968940..6968956,6969003..6971940))
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AA seq
984 aa
AA seq
DB search
MAEDDDVEMQNPEAAEEEHMMYGHGTMTEQELDEKYPNRPHNHSKTLPFHELFTHLFNPL
NDNKKKPTGPAQARKKVGTDGPRNNPNEIRRSIIDRFIGRWRKEVGNDIYPAFRLIVPEK
DRDRGMYGLKEMTLGKLLVRVLKINKDSEDGYNMLHWKLPGAESGSSTAGDFAGRCFNVI
SKRPMRQTPGDMTIAEVNELLDRLSVAQKEENQRPIIEEFYNRMNAEEMLWLIRMILRQM
KVGATEKTFFDIWHPDAENLFNISSSLKRVCWELYDPDVRLEGDDAGICLMQCFQPQLAA
FQMRSMEQMVAKMNPIEEDPVFWIEEKLDGERMQMHMIEDENMPGGHRFGFWSRKAKDYT
YLYGNGFEDDNAALTRHIRDALKDGVRNIILDGEMITWDMKEDCVVGFGTLKTAALEQQQ
NPFAGGHRPLFKVFDCLYLNDKDLTRYTLRDRRKALTSSITSVKRRLEIHEYQEAQEASE
IDLILRQVVAEASEGLVLKNPRSPYRLNERNDDWIKVKPEYMTEFGESLDCVVVGGYYGS
GKRGGGLSSFMCGLRVPAVIFEAFPNTNPQKTWSFFKVGGGFSANDYAEIRHRTDGKWID
WDRKKPPTDWLELGGGDRQYEKPDVWIKPEDSVVISVKAAQVGGTEQFRLGATLRFPRFK
KLRTDKDWTQALSVDEFIALKNEAEHAKEEKKFKIDEARKQRTTRKRKRALIIQGQEDEV
TTPYAGPATKVFEGLSFFVMSEAPNPIKKSKAELEALIKANGGNIVAAETDPHTILIADR
RVIKVASIAKRDERNIIRPSWLLDCVKQSEADIGRPGLLLPFEPQHLLHTMSSEEGRYDD
NVDEYGDSYARDVTPEALLQLFKSMPSKVEDGFEPAEILDQLNDHGHELDAMPGWMFHGV
TAFFEDVAFETTRLFEFAGGTVADSIEDDLVAHVVVPKGDAGAARRMRKAIANKKQLPRI
VSHDWVTDSWAEGTRLDEERYAQT
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagacgatgatgtcgagatgcagaacccagaagcggcagaggaggaacatatg
atgtacggccatggcacaatgactgaacaggaactcgatgagaagtatcccaatcggcct
cacaatcactccaagactctgccattccatgagctgtttacacatcttttcaatccactg
aacgacaataaaaagaaacccacaggaccagcgcaggctcgcaagaaggttggaactgat
ggaccgaggaacaaccccaacgagatcagacgatcaatcatagacagattcatcggaaga
tggcgcaaagaggtcggcaacgacatttatcctgctttccgcctcatcgtgcctgagaag
gaccgcgatcgaggcatgtacgggttgaaggagatgacactcggcaagctcctcgttcgc
gtcctgaagatcaacaaggacagcgaagatggctacaacatgctgcactggaaactgcct
ggagcggaatctgggagttcaacagctggtgactttgcaggaaggtgtttcaatgtcatc
agcaagcgcccaatgcgacaaacaccgggagacatgaccattgctgaggtcaacgaacta
cttgaccgcctgtcggtcgcccagaaggaagagaaccagcgtcccattatcgaagagttc
tacaatcgcatgaacgccgaggaaatgctatggctcatccgcatgatcttgcgtcaaatg
aaggtaggcgcaacggagaagacgttcttcgacatttggcacccagatgctgagaatctc
ttcaacatctcgagcagcttgaaacgtgtgtgctgggagctctacgatccggatgtacga
ctagaaggcgatgacgccggcatatgcttgatgcagtgtttccaaccacaattggccgcc
ttccagatgcgttccatggagcagatggtggcgaagatgaatccgattgaagaagaccct
gttttctggatcgaagagaagcttgacggcgagcgtatgcagatgcacatgattgaagat
gagaatatgcccggtggtcatcgcttcgggttctggtcgcgcaaggcgaaagactacacc
tacctgtatggtaatggcttcgaagacgacaatgcagcattgacacggcacatacgagac
gcgctcaaagacggcgtgcgaaacataatcctggacggcgagatgatcacctgggatatg
aaggaagactgtgtggtcggcttcggcacactgaaaacagctgccctggaacaacagcaa
aatccattcgcgggtggacatcgtccactcttcaaggtgtttgactgtttgtatctcaac
gacaaggacctcacacggtacactttacgcgatcggcggaaagcgctcacttccagtatc
acatccgtcaagcgtcgactagaaattcacgagtaccaagaagcccaagaagcgtctgag
atcgatcttatcctacgtcaagtagtggctgaagcaagtgaaggcctggtgctgaagaat
cctcgatccccatatcggctcaacgagcgcaacgatgactggatcaaagttaagcccgag
tacatgaccgagttcggcgagtcgttggactgcgttgtcgtcggtggctactatggctct
ggcaaacgaggcggaggcctgagcagcttcatgtgtggcctcagagtccccgccgttatc
ttcgaagcgttccctaacaccaaccctcagaagacttggtccttcttcaaagtcggcggt
ggcttcagcgccaacgactacgctgaaattcgacatcgaacagacggtaagtggatagac
tgggacaggaagaagccaccaacggactggctcgagctgggcggcggtgatcgccaatac
gagaaacccgacgtatggatcaagcctgaagactcagtcgtgatctccgtcaaggctgct
caagttggcggcaccgagcaattcaggttaggggccaccctgcgctttcctcgcttcaaa
aagctgaggacggacaaagattggacgcaagcactcagcgttgacgagttcatcgcgctc
aagaacgaagctgaacacgccaaagaagagaagaagttcaagattgacgaggcgcgaaag
caacgaacgactcggaagcgcaagcgcgcattgatcattcaaggccaggaagacgaagta
acaacaccctatgctggacctgctacaaaagtcttcgaaggcttgagcttcttcgtaatg
agcgaggcgccaaacccaatcaagaagtccaaagctgagcttgaagcattgatcaaagcc
aacggcggtaacatcgttgcagcagagacagatccccacacaatcctcatcgccgaccgg
cgtgtgatcaaagttgcctctatcgcgaagcgtgacgagagaaacatcattcgaccgagc
tggctactcgattgcgtgaagcagagtgaagctgacattgggcggcctgggctgttatta
ccgttcgagccgcaacacttactgcatacgatgtcgtcagaagaaggaaggtacgacgat
aatgttgatgagtacggtgatagctatgctcgagatgtaacaccagaggctctgctccag
ctgttcaagagtatgccctccaaggttgaagatggcttcgagccagcagagatcctcgat
cagctcaatgatcatggacatgagcttgatgcgatgcctggctggatgtttcacggtgtc
acggcattctttgaggacgtcgccttcgagaccaccaggctgttcgagttcgctggaggc
actgtggcagactcgatcgaagacgatttggtcgcccacgttgtggtgccgaagggtgat
gcaggtgctgctcggcgcatgcgtaaagctattgccaataagaagcagttgccacgcata
gtcagccatgactgggtgacggacagctgggcagaagggacccggctggatgaagagcga
tatgcgcagacttga
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