Fusobacterium gonidiaformans: C4N16_01505
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Entry
C4N16_01505 CDS
T05460
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fgo
Fusobacterium gonidiaformans
Pathway
fgo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4N16_01505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fgo03400
]
C4N16_01505
Enzymes [BR:
fgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4N16_01505
DNA repair and recombination proteins [BR:
fgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C4N16_01505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
Motif
Other DBs
NCBI-ProteinID:
AVQ16293
LinkDB
All DBs
Position
284399..287350
Genome browser
AA seq
983 aa
AA seq
DB search
MDKIQKYRGEIPYFIQENCKDILIYICSSYRNLEDYYSVLKDISSLPMYMLERKETEESI
SQRYELFEFFKKKKKAILLLTLDMFLTKYKEIGSYQIFTVGKEYSITKLVEHLEQQEYTR
NYLLEKKGEYSIRGDILDIYPYTDSSPIRIEFFGEEIERISYFDIENQKSFHLLKEYKMY
TDNNKIEKSLIPFLNLEKKNYSLFFENIELLSYKLEEMILLEENEREKQKYRKEFENLYE
NGIELEILQFQYQDLERFKKKEELEAISKSKKIILKSLEIEKYQEIYSNVISKYDKYPYF
EGYENEKELVLTDRELKGIRVKREIEKKKKLKISSPEQIQEGEYIIHENYGVGLYLGMEI
IDGKDYLRIQYADEDKLFVPLEGIQKIEKYVHVPGIIPEIYHLGTRGFSKKREKLQEDIL
KFAKEILEIQAKRKSIGGFQYSPDTVWQEEFESSFPYTETSAQKKAIQDVKQDMEMGKIM
DRLICGDVGYGKTEIAIRATFKAIMDHKQVVLLAPTTVLAEQHYHRFQERFLNYPIEIAV
LSRMKTPKEQKEILEKIKNGSIDLVIGTSRLLSDDLEFKDLGFLIIDEEQKFGVKAKEKF
KKIRGNLNILAMTATPIPRTLNLSLLGIRDLSIVDTPPDGRKTIKTFFIEKKEENIVKAI
LKELAREGQVFYVFNSVKRIEEKVKELEKILPSYVKIDYIHGKMSGKELKYKIEQFENMQ
IDVLVSTTIIENGIDIENANTMIIEGMEKLGLSQIYQLRGRIGRGRRQSYCYCIISEYKS
KKAEEREKSLIELGQGSGLDLSMEDMRIRGAGEILGEKQHGAIETLGYHFYMKMLEEEIA
KLKGEKIEETERKLYISLPFAKYIPDFYIQKEEKIVIYKRALSLQTMEEILEFEKEILDR
FGKFPQEVIGFFQYLKIQYYCKEFGIYELIETDFKYWIRFEENKVDIDRIVELFSQQKID
YLQRTKQVVFEGNIFNFFEMYKK
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatacaaaaatatagaggtgaaattccatattttattcaagaaaattgtaag
gatattttgatatatatttgttcttcctatcgtaatttggaagattactattctgtttta
aaagatatatcttccctacctatgtatatgttggaaagaaaagaaacggaagaaagtatt
tctcaaagatatgaattatttgaattttttaagaaaaagaaaaaagcaattttattattg
accttagacatgtttttaacaaaatacaaagaaataggaagttatcaaatttttacagta
ggcaaagaatattccattacaaaattagtagaacatttagaacaacaggaatatactaga
aactatttattagagaaaaagggagagtatagtattcgaggagatattttagatatttat
ccctacacagattcctctccaattcgaattgaattttttggagaagaaatagaaagaatt
tcctattttgatatagaaaatcaaaaaagctttcatttattgaaagaatataaaatgtat
acggataataataaaatagaaaaaagtttaattccatttttaaatttagaaaagaaaaac
tattctcttttcttcgaaaatatagaattattatcttataaactagaagaaatgatttta
ttagaagaaaatgaaagggaaaaacaaaaatatagaaaagaatttgagaacttatatgag
aatggaatagaattagaaatattacaatttcaatatcaagatttagaaagatttaaaaag
aaagaagaattagaagcaatcagtaaaagtaagaagattattttgaaaagtttggagatt
gaaaaatatcaagaaatttattctaatgtgatttcaaagtatgataaatatccttatttt
gaaggatatgaaaatgagaaagaattggtactcacggatcgagaattaaaaggaattcgt
gtgaagcgagaaattgaaaaaaagaaaaaattaaaaatatcaagtccggaacaaattcaa
gaaggagaatatattattcacgaaaattatggggtaggtctgtatttaggaatggaaatt
attgatggaaaagactatcttagaattcaatatgcggatgaagataaattgtttgttcct
ctagaagggattcaaaagatagaaaaatacgtccatgttccgggaatcattcctgaaata
tatcatttaggaacgagaggtttttctaaaaaacgagaaaagttacaggaagacatttta
aaatttgcaaaagaaattttagagattcaagcgaaaagaaagtcaataggtggttttcaa
tattctccagatactgtttggcaagaagaatttgagtcaagttttccttatacagaaaca
tcggctcaaaaaaaagccattcaagatgtaaagcaagatatggaaatgggaaaaattatg
gatcgattgatctgtggagatgttggatacggaaaaacagaaattgctattcgagcaact
tttaaagcgattatggatcacaagcaagtcgttttattagctcccaccacagtgttagca
gaacaacattatcatagatttcaagaaagatttttaaattatcctatagaaattgcagtt
ttaagtagaatgaaaactccaaaagaacaaaaagaaattttagaaaagataaaaaatgga
agtatagatttagttataggaacaagtcgtttattatccgatgatttagagtttaaagat
ttaggttttttaatcattgatgaagaacaaaaatttggagtgaaagcaaaagaaaaattt
aaaaaaataagaggaaatttaaatattttagctatgactgcaacaccaattccacggaca
ttaaatttatctcttctaggaattcgagatttatcgattgtagatactccacctgatgga
agaaaaaccataaagactttttttatcgaaaaaaaagaagaaaatattgtaaaagcaatt
ttaaaagaattggctcgagaagggcaagttttttatgtttttaattctgtaaaaagaata
gaggaaaaggtgaaagagctagaaaagattttaccttcttatgtaaaaattgattacatt
catggaaagatgtcaggaaaagaattaaaatataaaattgaacaatttgaaaatatgcaa
attgatgttttagtttctaccacaattattgagaatggaattgatattgaaaatgcaaat
actatgattattgaaggaatggaaaaattaggattgtctcaaatttatcagttacgagga
agaattggaagaggaagaagacaaagttattgttattgtattatatcagaatacaaaagt
aaaaaagcagaagaaagagaaaaatctttgatagaattagggcaaggcagtggtcttgat
ttatctatggaagatatgaggattcgtggtgctggagaaattttgggagaaaagcaacat
ggtgccattgagactttaggctatcatttttatatgaaaatgttagaggaagaaattgca
aaattaaaaggagaaaaaatagaagaaacagaaagaaaattatatatttctttacctttt
gcaaaatacattccagatttttatattcaaaaagaagaaaagattgtaatttataaaagg
gctttgtctttgcaaaccatggaagaaattttagaatttgaaaaagaaatattggataga
tttggaaagtttcctcaggaagtgataggattttttcaatatctaaaaattcagtattat
tgtaaagaatttggaatttatgaattgattgaaacagattttaaatattggattcgtttt
gaagaaaacaaagtagatattgatagaattgtagaattgttttcacaacaaaaaattgat
tatttacagagaaccaagcaagttgtttttgaaggcaatatctttaatttttttgaaatg
tataaaaaataa
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