KEGG   Flavobacterium humidisoli: M0M44_22495
Entry
M0M44_22495       CDS       T08925                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fhu  Flavobacterium humidisoli
Pathway
fhu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fhu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    M0M44_22495 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fhu03400]
    M0M44_22495 (ligD)
Enzymes [BR:fhu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     M0M44_22495 (ligD)
DNA repair and recombination proteins [BR:fhu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     M0M44_22495 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: UPZ15505
LinkDB
Position
5354921..5357491
AA seq 856 aa
MSLSKYHQKRDFKQTREPKGKVEKSANELIFVVQKHAASHLHYDFRLEMDGVLKSWAVPK
GPSMDPEVKRLAMMVEDHPYSYKDFEGTIPQGNYGAGNVIVWDNGTYTSDEKTASDEKQL
LSDLEKGRLSFILKGKKLKGEFSLIKLHGKQENAWLLIKKNDKYASSEDILEKNKSVISK
RSLEQLIEKAEKLSSKTEEKTVEKKAVKKKSNPKVEIAEFIKPMLASVREKPFDDEEWIF
ENKYDGYRTIAVINAQQVDLYSRNELSFNANFKPIADELKQIDHTVVLDGEIVVENDAGK
ADFQLLQKYMKTGIGNLKYYVFDLLNLDGNLITELSLLERKELLKILFNKYPFSNVFYSE
HTIGDGIKQFEKAVKNKTEGIIAKRADSTYAANRRSTNWLKIKTANEEEAIIIGITEPKN
SRKYFGALLLGQYNGKKLQYIGKCGTGFTESVLKDLYTQLEPYFIEKSPLDEKISLRDPI
QWVKPKLVCQVKFSEWTQDQHLRHPVYLGTRIDKKAVEVNFNGNDNSNVENDNNGSSNLI
EMEESNKHKTENDYDLKIGKTTLHLTNQNKVYFPKDGITKGDIVQYYNEVSELILPYLKD
RPESMNRFPNGIDSPSFYQKDVDVDKIPKWLKTKKIFSESNNANIDYLICNNKETLVYMA
NLGCIEMNPWNSTIKHIQNPDWLVIDLDPAKDDFKLVVQTALVVKEVLDELETECLCKTS
GASGLHIYIPLGAQYDYDSIKILAELIAKEIHSRLPYITSVDRSIKKRKNKLYIDFLQNR
RGQTLAAPYSVRPKPGATVSTPLEWSEVNEKLHPSQFTIKNVLSRFEKKGDLWKPVLSKG
ANIKKIIHKLENSQNA
NT seq 2571 nt   +upstreamnt  +downstreamnt
atgtcactgtctaaataccatcaaaaaagagattttaaacaaactcgtgaaccaaaggga
aaagtagaaaaatcggctaatgaactgatttttgtggtgcagaaacatgctgcgtcgcat
cttcattacgattttaggttagaaatggatggagttttaaaaagttgggcagtgccaaaa
ggcccgtcaatggatccagaagtaaaacgtctcgcgatgatggtagaagatcatccgtat
agttacaaggattttgaaggtacaattccacaaggaaattacggcgctggaaatgtaatt
gtgtgggataatggaacgtatacttcggacgaaaaaacagcttcggacgaaaaacaatta
ttaagcgatttggagaaaggacgtttaagctttattctaaaaggaaaaaaactaaaaggc
gaattttcgttgattaaacttcatggcaaacaagaaaatgcttggcttttaatcaagaaa
aacgacaagtatgcctctagtgaagatattttagaaaaaaataaatcggttatttctaaa
agaagtttagaacagctgatagaaaaagctgaaaaactgtcttcaaaaacagaagaaaaa
acagttgagaaaaaagcagtaaaaaaaaagtctaatccgaaagttgaaatagctgaattt
ataaaaccaatgcttgccagcgtacgcgaaaagccatttgatgatgaggaatggattttc
gaaaataaatacgacggttacagaaccattgctgtcataaatgcgcaacaagtcgatttg
tatagcagaaatgaactttcttttaatgctaattttaaacccattgccgacgaattaaaa
caaattgatcatacagtagttttggatggcgaaattgtggttgaaaatgatgcaggaaaa
gccgatttccaattgcttcaaaaatatatgaaaaccggaatcggaaatcttaaatattat
gtctttgatttattgaatttggatggaaatctgattactgaattatcccttttggaacga
aaagaactgctgaaaattctcttcaataaatatcctttttcaaatgttttttattctgaa
catactattggcgacggaataaaacaatttgaaaaagcagttaaaaataaaacggaaggc
ataattgccaaaagagccgatagcacttatgcggcaaacagaagaagtacaaactggctc
aaaataaaaacagcaaacgaagaagaagccataattattggaatcaccgaacctaaaaat
tcgagaaagtattttggcgcacttcttcttggtcaatataatggaaaaaaactgcaatat
attggcaaatgcggaacaggttttactgaatctgtactgaaagatttatacactcaactc
gagccttactttatagaaaaatctccgcttgacgaaaaaatctctttgcgcgatcccatt
caatgggtaaaaccaaagcttgtttgtcaggtaaaattttccgaatggacacaggatcag
catttgcgtcatcctgtttatcttggaacaagaatagacaaaaaagcagtggaagttaat
tttaatggcaatgacaatagcaatgtagaaaacgataataatgggagttctaatttaatt
gaaatggaagaatcaaataaacacaaaactgagaatgattacgatttaaaaattggcaaa
acgactttacatctcaccaatcagaataaagtttattttccaaaagatggtattacgaaa
ggtgatattgtgcaatattataatgaagtttcagaactgattttgccgtatttaaaagat
cgtccagaatcgatgaaccgtttcccgaacggtattgattctcctagtttttatcagaaa
gatgtcgatgtcgataaaattccgaaatggcttaaaaccaaaaaaatcttctcagaatcc
aacaacgccaacattgattatcttatttgcaataataaagaaacactagtttatatggcc
aatttgggctgtattgaaatgaatccgtggaattcgaccataaagcatattcagaatcca
gattggcttgtaattgatttagatcccgcaaaagacgactttaaactagtggttcaaacg
gctttggtcgtaaaagaagttttagacgagttggaaaccgaatgtttgtgcaaaacttcg
ggcgcttcgggacttcatatttacattccgcttggcgcgcaatacgattatgattcgatt
aaaattctagccgaattaattgccaaagaaatacattccagactgccctatattacttcg
gttgacagaagcatcaaaaaaagaaaaaataaactgtatatcgattttttacagaaccga
cgcgggcaaactttggcagcgccgtattcagtccgtccaaaacctggcgcaacagtttct
acgcctttagaatggagtgaagtgaatgaaaaactgcatccgtcgcaatttaccatcaaa
aatgtattgagtcgttttgagaaaaaaggcgatttatggaaacccgttttatccaaagga
gccaatattaaaaagattattcacaaactggaaaatagtcaaaacgcttaa

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