Flavobacterium humidisoli: M0M44_22495
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Entry
M0M44_22495 CDS
T08925
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fhu
Flavobacterium humidisoli
Pathway
fhu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M0M44_22495 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fhu03400
]
M0M44_22495 (ligD)
Enzymes [BR:
fhu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M0M44_22495 (ligD)
DNA repair and recombination proteins [BR:
fhu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M0M44_22495 (ligD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UPZ15505
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All DBs
Position
5354921..5357491
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AA seq
856 aa
AA seq
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MSLSKYHQKRDFKQTREPKGKVEKSANELIFVVQKHAASHLHYDFRLEMDGVLKSWAVPK
GPSMDPEVKRLAMMVEDHPYSYKDFEGTIPQGNYGAGNVIVWDNGTYTSDEKTASDEKQL
LSDLEKGRLSFILKGKKLKGEFSLIKLHGKQENAWLLIKKNDKYASSEDILEKNKSVISK
RSLEQLIEKAEKLSSKTEEKTVEKKAVKKKSNPKVEIAEFIKPMLASVREKPFDDEEWIF
ENKYDGYRTIAVINAQQVDLYSRNELSFNANFKPIADELKQIDHTVVLDGEIVVENDAGK
ADFQLLQKYMKTGIGNLKYYVFDLLNLDGNLITELSLLERKELLKILFNKYPFSNVFYSE
HTIGDGIKQFEKAVKNKTEGIIAKRADSTYAANRRSTNWLKIKTANEEEAIIIGITEPKN
SRKYFGALLLGQYNGKKLQYIGKCGTGFTESVLKDLYTQLEPYFIEKSPLDEKISLRDPI
QWVKPKLVCQVKFSEWTQDQHLRHPVYLGTRIDKKAVEVNFNGNDNSNVENDNNGSSNLI
EMEESNKHKTENDYDLKIGKTTLHLTNQNKVYFPKDGITKGDIVQYYNEVSELILPYLKD
RPESMNRFPNGIDSPSFYQKDVDVDKIPKWLKTKKIFSESNNANIDYLICNNKETLVYMA
NLGCIEMNPWNSTIKHIQNPDWLVIDLDPAKDDFKLVVQTALVVKEVLDELETECLCKTS
GASGLHIYIPLGAQYDYDSIKILAELIAKEIHSRLPYITSVDRSIKKRKNKLYIDFLQNR
RGQTLAAPYSVRPKPGATVSTPLEWSEVNEKLHPSQFTIKNVLSRFEKKGDLWKPVLSKG
ANIKKIIHKLENSQNA
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgtctaaataccatcaaaaaagagattttaaacaaactcgtgaaccaaaggga
aaagtagaaaaatcggctaatgaactgatttttgtggtgcagaaacatgctgcgtcgcat
cttcattacgattttaggttagaaatggatggagttttaaaaagttgggcagtgccaaaa
ggcccgtcaatggatccagaagtaaaacgtctcgcgatgatggtagaagatcatccgtat
agttacaaggattttgaaggtacaattccacaaggaaattacggcgctggaaatgtaatt
gtgtgggataatggaacgtatacttcggacgaaaaaacagcttcggacgaaaaacaatta
ttaagcgatttggagaaaggacgtttaagctttattctaaaaggaaaaaaactaaaaggc
gaattttcgttgattaaacttcatggcaaacaagaaaatgcttggcttttaatcaagaaa
aacgacaagtatgcctctagtgaagatattttagaaaaaaataaatcggttatttctaaa
agaagtttagaacagctgatagaaaaagctgaaaaactgtcttcaaaaacagaagaaaaa
acagttgagaaaaaagcagtaaaaaaaaagtctaatccgaaagttgaaatagctgaattt
ataaaaccaatgcttgccagcgtacgcgaaaagccatttgatgatgaggaatggattttc
gaaaataaatacgacggttacagaaccattgctgtcataaatgcgcaacaagtcgatttg
tatagcagaaatgaactttcttttaatgctaattttaaacccattgccgacgaattaaaa
caaattgatcatacagtagttttggatggcgaaattgtggttgaaaatgatgcaggaaaa
gccgatttccaattgcttcaaaaatatatgaaaaccggaatcggaaatcttaaatattat
gtctttgatttattgaatttggatggaaatctgattactgaattatcccttttggaacga
aaagaactgctgaaaattctcttcaataaatatcctttttcaaatgttttttattctgaa
catactattggcgacggaataaaacaatttgaaaaagcagttaaaaataaaacggaaggc
ataattgccaaaagagccgatagcacttatgcggcaaacagaagaagtacaaactggctc
aaaataaaaacagcaaacgaagaagaagccataattattggaatcaccgaacctaaaaat
tcgagaaagtattttggcgcacttcttcttggtcaatataatggaaaaaaactgcaatat
attggcaaatgcggaacaggttttactgaatctgtactgaaagatttatacactcaactc
gagccttactttatagaaaaatctccgcttgacgaaaaaatctctttgcgcgatcccatt
caatgggtaaaaccaaagcttgtttgtcaggtaaaattttccgaatggacacaggatcag
catttgcgtcatcctgtttatcttggaacaagaatagacaaaaaagcagtggaagttaat
tttaatggcaatgacaatagcaatgtagaaaacgataataatgggagttctaatttaatt
gaaatggaagaatcaaataaacacaaaactgagaatgattacgatttaaaaattggcaaa
acgactttacatctcaccaatcagaataaagtttattttccaaaagatggtattacgaaa
ggtgatattgtgcaatattataatgaagtttcagaactgattttgccgtatttaaaagat
cgtccagaatcgatgaaccgtttcccgaacggtattgattctcctagtttttatcagaaa
gatgtcgatgtcgataaaattccgaaatggcttaaaaccaaaaaaatcttctcagaatcc
aacaacgccaacattgattatcttatttgcaataataaagaaacactagtttatatggcc
aatttgggctgtattgaaatgaatccgtggaattcgaccataaagcatattcagaatcca
gattggcttgtaattgatttagatcccgcaaaagacgactttaaactagtggttcaaacg
gctttggtcgtaaaagaagttttagacgagttggaaaccgaatgtttgtgcaaaacttcg
ggcgcttcgggacttcatatttacattccgcttggcgcgcaatacgattatgattcgatt
aaaattctagccgaattaattgccaaagaaatacattccagactgccctatattacttcg
gttgacagaagcatcaaaaaaagaaaaaataaactgtatatcgattttttacagaaccga
cgcgggcaaactttggcagcgccgtattcagtccgtccaaaacctggcgcaacagtttct
acgcctttagaatggagtgaagtgaatgaaaaactgcatccgtcgcaatttaccatcaaa
aatgtattgagtcgttttgagaaaaaaggcgatttatggaaacccgttttatccaaagga
gccaatattaaaaagattattcacaaactggaaaatagtcaaaacgcttaa
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