Fusobacterium hwasookii: RN87_02145
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Entry
RN87_02145 CDS
T04183
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fhw
Fusobacterium hwasookii
Pathway
fhw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fhw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RN87_02145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fhw03400
]
RN87_02145
Enzymes [BR:
fhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RN87_02145
DNA repair and recombination proteins [BR:
fhw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RN87_02145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALQ39395
UniProt:
A0A0S2ZKC4
LinkDB
All DBs
Position
complement(458194..461148)
Genome browser
AA seq
984 aa
AA seq
DB search
MEKKFRGEIPFWLKNKKNNLVYICSSNRNIDDYFFVLKDFYKEKILRIKKENEAGELKKY
NYDLLELINSNEKFIILISLDYFLEDYYSEANSIFIEKGKNLDIKDLEEKLIDADFEKTY
MLAQRKEYSIRGDILDIFNINQDNPVRIEFFGNEVDRITYFDINSQLSIEKKDSIELYID
NNKNKKDLFSLMSMNKNKIEYYYENNDILQAKIKRLINENLDREEDILNKIAELSKIGIQ
IEIQKFSEEELKQFEVIDRVKKLSENTKITIYSEEATRYKEIFKDYSLKFEKYPLFEGYK
TDDKLILTDREIKGIRVKRERVEKKALRYKAVDEIKEQDYVIHENFGVGIFLGLENIEGQ
DYLKIKYADEDKLFVPVDSINKIEKFINISDIIPEIYKLGRKGFKRKKDKLSEDIEIFAK
EIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQLKAIEDVKRDMESGKIMDRLI
CGDVGYGKTEVAIRAAFKAVMDSKQVILLVPTTVLAEQHYERFSERFKNYPVHIEILSRV
QSKKEQVESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDEEQKFGVKAKEKLKKIK
GDLDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIQTEYIDNNKNLIKEIILSEI
SREGQVFYIFNSVKRMESKVKEIRELLPEYIKVSYIHGQMLPRDIKKNIQEFENGNVDVL
VATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRIGRSTKKSYCYMLTNENKTKNAQ
KREESIREFDNLTGIDLAMEDSKIRGVGEILGEKQHGAVETFGYNLYMKMLNEEILKLKG
EAEEELDEVDVELNFPRFLPDSYIEKNEKVKIYKRALALKTLDELENLYNELEDRFGKIK
SEAKGFFEFIKIRIIARDLGITTIKQDKENKDRILINFNEKKINVDKIIYLLNNKKIMYS
KFTRTISFEGNIFDFFYLYSPPLN
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaatttcggggggaaatcccattttggttgaagaataaaaaaaataatctt
gtatatatctgttcatctaacagaaatatagatgattatttttttgtgttaaaggatttt
tacaaggaaaaaattcttagaataaaaaaagaaaatgaagctggagaattaaaaaaatat
aattatgatttattagagcttataaattcaaatgaaaaatttataattcttatctcttta
gattattttttagaagattactattcagaagctaatagtatttttattgaaaaaggaaaa
aatcttgatattaaagatttagaagaaaaattgatagatgcagattttgaaaaaacatat
atgcttgcccaaagaaaggaatactctataaggggagatattttagatatatttaatatc
aatcaagataatcctgtgagaatagaattttttggaaatgaagttgatagaataacatat
tttgatataaattctcaattaagtatagaaaaaaaagatagtatagaattgtatatagac
aataataaaaataaaaaagatttattctctcttatgtctatgaacaaaaataaaatagaa
tattattatgaaaataatgatatattacaagctaaaattaaaagacttatcaatgaaaat
ttggatagagaagaagatattttaaataaaatagctgaactttctaaaataggtatacag
atagaaatacaaaaattctctgaagaagaattgaagcagtttgaagttatagatagagtt
aaaaaattatctgaaaacactaaaattacaatttattcagaagaagcaactagatataaa
gaaatctttaaggactattctcttaaatttgaaaaatatccactttttgaaggatataaa
acagatgataagttgatactgacagatagagaaattaagggtatcagagtaaaaagagaa
agagttgaaaagaaagcacttaggtataaggctgttgatgaaataaaagagcaagattat
gtaattcatgaaaattttggtgtaggaatatttttaggcttagaaaatattgaagggcaa
gattatttaaaaataaaatatgcagatgaagataaattatttgttccagttgatagtata
aataagatagaaaaatttataaatatttctgatattatacctgaaatctataagttgggt
agaaaaggttttaaaagaaagaaagataaattaagtgaagatatagaaatttttgctaag
gaaattataaaaatacaagctaaaagaaatttaggaaatggttttaaattttcaaaagat
actgttatgcaagaagaatttgaggaaacttttccatttacagaaacacctgcacaatta
aaagctattgaagatgtaaaaagagatatggaatctggaaaaattatggatagacttata
tgtggagatgtaggctatggaaaaacagaggttgcaataagagcagctttcaaagctgtg
atggatagtaaacaagtaattcttttagtacctacaacagttttagcagagcaacattat
gaaagatttagtgaaagatttaaaaattatcctgtacatatagaaattttgagtagagtt
caatcaaaaaaagaacaagttgaaagtcttaaaagaattgaaaatggttcagcagactta
gtgattggaactcatagactattatcagatgatataaaatttaaagatgtaggacttctt
attatagatgaagaacaaaagtttggagttaaagcaaaagaaaaattaaaaaagattaaa
ggtgatttagatgttttgactttaactgctactcctattcctagaactttaaacttatca
ctattaggaattagagatctatctgtaatagatacttccccagaaggcagacaaaaaatt
caaacagagtatatagacaataataaaaatttaattaaagaaataattctttctgaaatt
tcaagagaaggacaagttttttatatatttaattctgtgaaaagaatggaaagtaaggta
aaagaaataagagagttactaccagaatatattaaggttagttatattcatgggcaaatg
ttgccaagagatataaaaaagaatattcaagaatttgaaaatggtaatgtagatgtcttg
gtggcaactacaattatagaaaatggaattgatatagaaaatgctaatactatgataatt
gaaggagttgaaaaactaggactatctcaagtctatcaactgagaggaagaattggcaga
agcactaaaaaaagttattgctatatgcttacgaacgaaaataaaactaaaaatgcccaa
aaaagagaggaaagtattagagagtttgacaatttaacaggtatagatttagcaatggaa
gattcaaaaattagaggtgttggagaaattttaggagaaaaacaacatggggcagttgaa
acttttggttataatctatatatgaagatgttaaatgaagaaattttaaaattaaaggga
gaagcagaagaagaacttgatgaagttgatgttgaacttaatttcccaagatttctacca
gatagctatatagaaaaaaatgaaaaggtaaaaatatataaaagagccttagctttaaaa
actttagatgaattagaaaacttatataatgaattagaagatagatttggaaaaattaaa
tctgaggcaaaaggattttttgaatttataaaaataagaataatagcaagagatttagga
atcacaactataaaacaagataaagaaaataaagatagaattttaattaattttaatgaa
aagaaaataaatgttgataaaattatttatttattaaacaataagaaaataatgtattct
aaatttactagaacaataagttttgaaggaaatatttttgattttttttacttatattca
ccaccccttaattaa
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