Candidatus Filomicrobium marinum W: BN1229_v1_3430
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Entry
BN1229_v1_3430 CDS
T03856
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fil
Candidatus Filomicrobium marinum W
Pathway
fil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN1229_v1_3430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fil03400
]
BN1229_v1_3430
Enzymes [BR:
fil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN1229_v1_3430
DNA repair and recombination proteins [BR:
fil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN1229_v1_3430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CFX50883
UniProt:
A0A0D6JHE2
LinkDB
All DBs
Position
1:3346709..3349189
Genome browser
AA seq
826 aa
AA seq
DB search
MTSRTKTQALRLNTYAAKRDFKRTPEPPPTRGTARNKSQSHIFVVQHHIARRDHFDLRLE
IDGTLKSWAVTRGPSALPGTRRLAVRTEDHPLDYASFEGVIPEKSYGAGTVMLWDHGTWS
GASDKEMLHNLTQGHLKFTLHGARIRGRWALVRMGHEGQRENWLLVKDRDAYAEDDDSLA
ARYSTSVVSGRSMDEIAEGRASYRQASSSRKTTSLLKFIPPMLCTLADKVPEGRDWLYEM
KYDGYRTELITGNGAARLFTRNGHDWTDRFPDIAEAAATIPPAILDGEVVVFDAHGLSDF
GALAAALGSGPKAPMTFIAFDVLRTGKRDVRGQSLSKRKAHLDTLLATFGKPELIRIAPT
LQGSGPKLLERIAKSGGEGIIAKRAGSTYRSGRSKSWLKIKAIAREDAVVIGFTPSSAGR
PFASLAVAQSDGDRLRYWGRVGTGFSARTDNELGAKLSRLVRPSPPEGLEGLDLVPKKVR
WVAPELRIAVQHRGKTVNGLLRAARYVGLREDLSSGKSHRSSLRGSPVPSPSRQTVSRDT
KVPLTHGSRVIFPKVGLTKRDLADYYAEAADLILPHLENRPISVVRAPDGIDGETFFQRH
PMKAMKAGIIRVPDPAKSHPDYMALDGSPGLATVVQFGGIELHGWGARLPDLNAPDRMVF
DLDPDGEVSFATVRDSAFLVKEVLSSAGLKSFAMATGGKGVHVVVPLNRTQTWDDISGFA
SGLARRLAKLEPGSFVATASKSRRKGRIFIDWLRNKAMATAIVPYSVRARDVASIACPVS
WSALKDLESAKPYTVETIRLSSRQPWAGYFNVDQAIAPRALEMMTS
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcccgcaccaaaacccaagccctgcggctcaatacgtatgcggccaagcgcgac
tttaaaagaacaccggagccgcctccgacccggggaactgcacgaaacaagtcccagtct
catatcttcgttgtccagcaccacatcgcccgccgcgatcatttcgatctgcgcctcgag
atcgatggaacgctcaaaagctgggcggtcacgcgggggccgagcgcactccctggaaca
cgccgccttgccgtacggacggaagatcatcctctggattatgcgagctttgagggcgtt
atcccggaaaaatcctatggtgcgggcaccgtcatgctgtgggatcacggcacttggtca
ggtgcttccgacaaagaaatgctacacaacctcacgcaaggccatctcaaattcaccctg
cacggtgcacgcatccgcggacggtgggcactcgtgcgcatggggcacgaaggacagcgc
gaaaactggctgctcgtcaaagaccgggacgcttatgcggaagatgacgacagccttgcc
gcgcgctattcaaccagcgttgtttcgggacggtcgatggacgaaatcgcggaggggcga
gcctcctaccgtcaggcttcttcgagcaggaaaacgacatcccttctcaagtttatcccg
ccgatgttgtgcacgttggccgacaaggtgcccgagggtcgcgactggctctacgagatg
aaatacgacggctaccgtacggaactcatcacaggaaacggcgcggcgcgactgttcact
cgcaacggccatgactggacagatcgatttcccgacatcgccgaagcagccgcgacgatt
cctcctgcaatcctggacggggaagtcgtcgtattcgacgcgcatgggctctctgatttc
ggcgcgcttgccgccgcgcttggctctgggcctaaagctccgatgacctttatcgccttc
gacgttctgcgaacaggcaagcgtgacgtgaggggccaatctctgagtaaacgcaaagcg
catttggacacgctactggccaccttcggaaagccggaactcattcggatcgcacccacc
ttgcaaggaagcggccccaagcttctggaaaggatcgcgaaatcgggaggcgaaggcatc
atcgcgaaacgcgcgggatcgacctaccgctctgggcgctcgaagtcatggcttaagatc
aaagcaattgctcgagaggatgcggtcgtcattggcttcacgccgtcgagcgccggccgg
cccttcgcttcgcttgctgtcgcgcagtctgatggcgacaggctgcgttattgggggcgc
gttggcaccgggtttagcgcgcggacggataatgagttgggcgcgaagctttccagactc
gtacgcccatcaccgccagagggcttggaaggtttggatcttgttcctaaaaaggtgcgt
tgggttgccccggaactcaggatcgctgttcagcatcgcggaaagacggtcaacggattg
ttgcgagctgcgcgttatgttggcttgcgcgaagatctttccagcggcaaatcccatcga
tctagcttgcgagggtcgcccgtgccaagtccgtcacgccaaacggttagcagggatacc
aaggtgcccttgacgcatggctctcgcgtcatattcccaaaggtgggcctgaccaaacgt
gacctcgccgactactatgccgaggctgcggatctcatcctcccgcatctggaaaaccga
cccatcagcgttgtacgcgcgccggacggtatcgatggtgaaactttcttccaacgccat
cccatgaaggccatgaaagccgggatcatcagagttccggaccccgctaaatcacatccc
gactatatggccctcgacggcagtcccggtcttgcgaccgtcgtgcaatttggtggcatc
gaacttcacggatggggggcgaggcttcccgaccttaatgcccccgaccgcatggtcttc
gacctcgatccggatggtgaggtctcctttgctacagtgcgggacagcgcctttctcgtg
aaggaggtgttgtccagcgccgggctcaagagctttgcaatggccaccggcggcaaaggc
gttcacgtcgtcgtcccgctcaatcgcacacagacttgggacgatatatccgggttcgcc
tctggcttagcgcggcggcttgctaagctcgagccgggttcgtttgtcgccacggcgagc
aagtcgcgacgcaagggtcgcatctttatcgattggctgcgtaacaaagcgatggcgacg
gcaattgtgccttattcggttcgagcgcgagatgtggcgtcaatcgcttgtccggtttca
tggtcagcgctgaaggacctggagagcgccaaaccgtacaccgttgagactatccgcctt
tcaagccgtcagccgtgggctggatatttcaatgtggatcaggcgattgcgccgcgcgcg
ctggaaatgatgacgtcttga
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