Fischerella sp. NIES-3754: FIS3754_23850
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Entry
FIS3754_23850 CDS
T04195
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fis
Fischerella sp. NIES-3754
Pathway
fis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FIS3754_23850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fis03400
]
FIS3754_23850
Enzymes [BR:
fis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIS3754_23850
DNA repair and recombination proteins [BR:
fis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FIS3754_23850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
PsbQ
Motif
Other DBs
NCBI-ProteinID:
BAU06468
UniProt:
A0A0S3TN42
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Position
complement(2731370..2734936)
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AA seq
1188 aa
AA seq
DB search
MAFSSIVRALGRSPLTTEFISKLDRQQDLHLNGIPRLPKGLLASALAQTKGQNLFVVCAT
LEEAGRWTAQLEAMGWQTIHFYPTSEASPYEPFDPETEMTWGQMQVLADLVKYQWEGKDK
EENSSLSPLSPSPKFAIVATHAALQPHLPPPTSFAPFCFTLKQGMELDLNSFSEKLASLG
YERVALVETEGQWSRRGDIVDVFPVSSELPVRLEWFGDKIEQIREFDPATQRSALDKIDQ
LILTPTSFAPVVMAALSGERLENVKTYLCAVEKEQFEAGTSLEGSRRFLGLAFTKPASLL
DYLPANTLIAIDEPEQCHAHSDRWVENAEEQWLLLGSKGADEDEGDRALEAALIALPKIH
CWFDDCLAASQAFKKVYLSEIAEENQGINLACRGLPTTPHAYAKIAETLRQERDRHFSIW
LISAQPSRSVSLLQEHDCPAQFIPNPRDYQAIDKLQINHVPVALKYSGLAELEGFILPTF
RTVIVTDREFYGQHTLATFGYIRKRRQAASKQVDPNKLRPGDYVVHRNHGIGKFLKLESL
TVNNETRDYLVVQYADGLLRVAADQVNALSRFRTTSDKPPELNKMTGKAWENTKNKVRKA
IKKLAVDLLKLYAARSQQKGFAFPADMPWQQELEDSFPYQPTTDQLKAVQDVKRDMESDR
PMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPINI
GLLNRFRSPQERRDIQKRLTTGELDVVVGTHQLLSKDVHFKDLGMLVVDEEQRFGVNQKE
KIKTLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLAPMNPETVRS
AIRQELDRGGQVFYVVPRVEGIEKRTEELREMIPGARIAIAHGQMEAGELESIMLSFSSA
EADILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQR
TLSDAARQRLRAIQEFTQLGSGYQLAVRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLE
EAIREIRGQEIPKVEDTQIDLNLTAFVPADYIPDIDQKMSAYRAVAAAKSKEELTQIAAE
WSDRYGTIPKPASQLLRVMELKQLAKKLGFSRIKPEAKQHVVLETPMEEPAWNLLAGNLP
ENLKSRFVYSPGKVTVRGLGVFKADQQLQTLIDAFEKMQGAVVEAAVI
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttccattgtgcgcgctctagggcgatcgccgctcaccacagaatttatc
tccaagctggatcggcaacaagatttacatttgaatggcattcctcgcttgccaaaaggc
ttgctagcttcggcattagctcaaactaagggacagaatttatttgtggtctgtgccact
ttggaggaagctggacgctggacagcacaactggaggcgatgggatggcaaactatacat
ttttatcccacatccgaagcatccccctacgaaccttttgaccctgaaaccgaaatgact
tggggacagatgcaggtattggcagatttggtcaagtatcaatgggaaggcaaagacaag
gaagaaaattcctccttgtcccccttgtccccatctcctaagttcgccatcgtcgccacc
cacgccgccttacaaccccacctaccaccgccaacaagctttgctcctttctgttttacc
ctcaaacaagggatggaattggatttaaatagtttcagtgaaaaattagcgagtctgggg
tacgaacgggttgcattagtagaaacagaagggcagtggagtcgccggggtgatattgtt
gatgtgtttcctgtgtcctctgaactgccagtccgcttagagtggtttggtgacaaaatc
gagcaaatccgagaatttgatccggcaactcaacgttcagctttagataaaatcgaccaa
ttaattctcactcccactagctttgcgcctgtggtaatggcagctttgagtggggaaagg
ctagaaaatgtcaaaacctatctttgcgcagtcgaaaaagaacagtttgaagcaggtaca
tctttagaaggtagccgtcgctttttaggcttggctttcacaaaaccagcttcattatta
gattatttaccagcaaatactttaattgctattgatgaaccagaacagtgtcatgctcat
agcgatcgctgggtagaaaatgccgaggaacagtggctacttttaggcagcaagggagca
gatgaggacgaaggtgatcgagctttagaagcagctttaattgccttaccaaaaattcat
tgttggtttgatgattgtttggctgcttcccaagcatttaagaaagtatatttatcagaa
attgctgaagaaaatcaaggtataaatcttgcttgtcgtggactaccaacgacgccccac
gcttatgccaaaattgctgaaacccttagacaagagcgcgatcgccatttctcgatttgg
ttaatttcggcacaacctagccgttccgtctcgctgttgcaagaacacgattgtcctgcc
cagtttatcccgaatccccgcgactaccaggcgatcgacaagttacaaattaatcacgta
ccagttgctctgaaatattccggtttggcagagttggaaggttttatcctgccgactttt
cgcacagtgattgtcactgaccgggaattttacggacaacatactctggcaactttcggt
tatatccgtaagcgtcgtcaagctgcttctaagcaagtagaccccaacaaactccgtccc
ggtgattatgtagttcacagaaatcacggtatcggtaaattcctcaagctggaaagtctc
acggttaacaatgaaacccgtgattatttagtcgtgcaatacgcagatggtttgttacgg
gtagcagccgatcaagtcaatgctttatcacgctttcgtaccaccagcgataagccacca
gaactaaataaaatgactggtaaggcttgggaaaataccaagaacaaagtccgcaaagcc
ataaagaaactggcggtggacttgctgaaattatatgcagcgcgatcgcaacaaaaaggt
tttgcctttccggcagatatgccttggcagcaagaactagaagattcgttcccttaccaa
cccacaaccgatcagctcaaagctgtacaagatgtgaagcgggacatggaaagcgatcgc
ccaatggatcgcttagtgtgtggcgatgtcggtttcggtaaaactgaggtggctatccgc
gctatctttaaagcagtcaccgccggcaaacaagtggcactccttgcacctactactatc
ctaacgcagcaacactatcacactcttaaagaacgctttgcgccttacccaattaacatt
ggtttactgaaccgtttccgcagtccccaagaacgccgcgatattcaaaaacgcttgaca
acgggtgaattagatgtagtagtgggtacacaccaactattgagtaaagacgtacatttc
aaagatttgggaatgttggtggtggatgaagaacagcggtttggggtgaaccaaaaagaa
aaaattaaaactttgaaaactcaggtggatgtactgactctctcagccacacccatcccc
cgtaccttatatatgtctttatcgggtatccgggaaatgagtttgattactacaccgcca
ccatcccgccgtccgatcaaaactcatcttgcaccaatgaacccagaaacagtccgcagt
gccattcggcaagaactcgacagaggcggacaggtgttctatgtcgtaccccgtgtcgaa
ggtatcgaaaaaagaacagaggagctgcgggaaatgatcccaggggcgagaatagcgatc
gctcacggacaaatggaagcaggcgaattagaatcgattatgctttccttcagtagtgcg
gaagcagatatcttggtttgtaccacaattattgaatctggtttagatatcccccgcgtc
aatacaattttgatagaagatgcccatcgttttggtttagcacagttgtatcagttgcgg
ggaagggtaggacgtgcagggattcaggctcacgcttggctattttacccgaaacaacgc
acattatctgatgctgcccgccaacgcctacgagccatccaggaatttacacaattgggt
tccgggtatcaattagccgtgcgggatatggaaattcgcggtgttggtaacttattgggt
gcagaacaatcagggcaaatggaagcaattggtttcgatttatacatggaaatgttggaa
gaagccattcgggaaatccggggacaagaaatacccaaagttgaggacacccaaattgat
ctcaacctcacagcctttgttcctgctgattacatccccgatatcgatcaaaagatgagt
gcttaccgtgcggtagctgctgccaaatctaaagaagaactaacacaaattgctgctgag
tggagcgatcgctacggtacgattcccaaacctgctagtcaactattgcgggtgatggaa
ttgaaacaattagctaaaaaactaggctttagtcgcattaaaccagaagcaaaacaacac
gttgttttagaaacaccaatggaagaacctgcttggaatttgttagcaggaaatttacca
gaaaatctcaaatctcgttttgtttattcaccaggaaaagtcacagtacgcggcttggga
gtgttcaaggcagatcagcaattgcaaaccttaatagatgcgtttgagaaaatgcagggt
gcagttgtggaagcggcggttatttaa
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