Flavobacterium johnsoniae UW101: Fjoh_3303
Help
Entry
Fjoh_3303 CDS
T00508
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Fjoh_3303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fjo03400
]
Fjoh_3303
Enzymes [BR:
fjo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Fjoh_3303
DNA repair and recombination proteins [BR:
fjo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Fjoh_3303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ABQ06319
UniProt:
A5FEP5
LinkDB
All DBs
Position
3945432..3947999
Genome browser
AA seq
855 aa
AA seq
DB search
MPMSLSKYNEKRDFKQTREPKGKVEKSANELIFVVQKHAASHLHYDFRLEMNGVLKSWAV
PKGPSMDPEVKRLAMMVEDHPYSYKDFEGTIPAGNYGAGNVIVWDNGTYTSDEKTASDEK
QLLADLKKGRLSFVLKGKKLKGEFSLVKLHGKQENAWLLIKKQDKYASESDILEKDKSVI
SKRSLEELEKKSDKMTAKSEEKETKLKAIKKKPKAKTIKAEFIKPMLANTTEKPFDDEEW
IFENKYDGYRTIAVVNSDKTALFSRNKISFDINFKPIADELKKIDHTVVLDGEIVVENKS
GRADFQLLQNYLKTGIGNLKYYVFDLLNLDGNEVTELSLLDRKELLKILFNKYSFSNIFY
SEHTIANGIEQFEKARKNNSEGIIAKKADSSYTAGGRSNNWLKIKISNEEEAIIIGITEP
KNSRKYFGAILLGQYNGKNLQYIGKCGTGFTEAVLKELYTKLKPLFTDQSPLQEKVPLRD
TIQWVKPKLVCQVKYSEWTQDNNLRHPVYLGLRIDKKAQEVVFNGNDNTKTINHNQEKME
NLKEHTTENDYDLKIGKTILHLTNQNKIYFPQDGITKGDIIQYYNEAAPLMLPYLKDRPE
SMNRFPNGIDSPGFYQKDIDADKTPKWLKTKKIFSESNDADVNYLICNDKETLLYMANLG
CIEINPWNSTIKNISNPDWLVIDLDPAKEDDFKSVIETALVVKEVMDELQTECLCKTSGA
SGLHIYIPLGAQYDYDSIKILAELIAKEVHTRLPKTTSIERSIKKRKNKLYIDFLQNRRG
QTLAAPYSVRPQPGATVSTPLEWNEVNEKLHPSQFTIKNVLQRFEKKGDLWKPVLSKGAN
IKKIIKKLEEKQLEN
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgcctatgtcactgtctaaatacaacgaaaagagagattttaagcaaacacgcgagcca
aaaggcaaggttgaaaaatcggccaatgaattgatttttgtcgttcaaaaacatgctgca
tcgcatttgcattatgattttagactggaaatgaacggcgttctcaaaagctgggcagtt
ccaaaaggtccttcaatggatcccgaagtaaaacgtcttgctatgatggtcgaagatcat
ccttacagttataaagattttgaaggaacaattccggccggaaactatggcgccggaaat
gtaattgtatgggataacggtacgtatacttctgacgaaaaaacagcttctgatgaaaaa
cagcttttagccgatcttaaaaaaggccgtctgagttttgtcttaaaaggaaaaaaactt
aaaggcgaattttcattggtaaaacttcatggaaaacaggaaaatgcctggcttttaatc
aaaaaacaggataaatatgcttcagaatcagatatattagaaaaagacaaatcggttatt
tctaaaagaagtctggaagaactggagaaaaaatcagataagatgaccgccaaatctgaa
gaaaaagaaaccaaactaaaagccataaaaaaaaagcctaaagcaaaaactataaaagcc
gaattcatcaaaccgatgcttgccaatactacagaaaaaccttttgatgacgaggaatgg
atttttgaaaataaatacgacggttaccgtacgattgctgttgttaactctgataaaaca
gcattattcagcagaaataaaatttcttttgatatcaattttaaacccattgcagacgaa
ttaaaaaaaatagatcataccgtagttctcgatggcgaaattgtagtggaaaataaatct
ggacgagccgattttcaactgcttcaaaactatttaaaaaccggaattggaaatttaaaa
tattatgtttttgatttactcaatttagacggaaatgaggtgacagaattgtctctcctc
gatcgaaaagaacttcttaaaattttatttaataaatattctttttcgaatattttctat
tctgaacatacaattgcaaatggaattgagcaatttgaaaaagcgcgaaaaaataacagc
gaaggaataattgccaaaaaagcagacagttcttataccgctggcggaagaagcaataac
tggctgaaaataaagatttctaacgaagaagaagccattattatcgggattacagaaccc
aaaaattcccgaaaatattttggcgcaattttgctgggtcaatacaacggtaaaaatctg
caatatatagggaaatgcggcactggatttaccgaagctgttttaaaagaactttatact
aaattaaaacctctttttacagatcaatcaccattgcaggaaaaagttcctttacgggat
actattcaatgggtaaagcccaaattagtctgtcaggtaaaatactctgaatggacgcag
gataacaatttaagacatccggtttatctgggattacgaattgacaaaaaagcccaagag
gttgtttttaatggaaatgacaacactaaaactataaatcacaatcaggaaaaaatggaa
aatttaaaagaacatacaactgaaaatgattacgatttaaaaattggaaaaacgatactc
catttaaccaatcaaaataaaatttatttcccgcaggacggaattacaaaaggcgatatt
attcaatattataatgaagccgcaccgttaatgctgccctatttaaaagaccgtccagaa
tcgatgaaccgttttcctaacggaattgattcgcctggtttttaccaaaaagatattgat
gccgacaaaactccaaaatggctgaaaaccaaaaaaatcttttcagaatcaaacgatgcc
gatgttaattatcttatttgtaatgataaagaaacgctgctttatatggcaaatttgggc
tgtattgaaatcaatccgtggaattccactataaaaaacatttcgaatccggattggctg
gtaatcgatttagatcctgcgaaagaagatgattttaaatctgtaatcgaaacagcatta
gtagttaaagaagttatggatgaattgcaaaccgagtgtttgtgcaaaacttccggagct
tcaggactgcatatttatataccgcttggcgcacaatacgactatgattctattaaaatc
ctggccgaattaattgcaaaagaagtacatacaagactgcctaaaactacttcaattgaa
cgaagcatcaagaaaagaaaaaataaattgtatatcgattttcttcaaaaccgaagagga
caaactttggccgcgccctactctgtccgcccgcaaccaggcgcaacagtttcgactccg
ttagaatggaatgaagtaaatgaaaaacttcatccgtcgcagtttacgataaaaaatgta
ttgcagcgttttgagaaaaagggtgatttatggaaacctgttttgtcaaaaggtgccaat
atcaaaaagattatcaagaaattagaggaaaaacaactggaaaattaa
DBGET
integrated database retrieval system
