Flammeovirga kamogawensis: KM029_07360
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Entry
KM029_07360 CDS
T07412
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fka
Flammeovirga kamogawensis
Pathway
fka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KM029_07360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fka03019
]
KM029_07360
Enzymes [BR:
fka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KM029_07360
Messenger RNA biogenesis [BR:
fka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KM029_07360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_19
AAA_22
PRAI
Motif
Other DBs
NCBI-ProteinID:
QWG08749
LinkDB
All DBs
Position
1:complement(1881119..1882396)
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AA seq
425 aa
AA seq
DB search
MKFEKYNISVSLKKSLAEKGFKKPTDIQFKSIPPILKGEDVLAIAQTGTGKTAAFAIPIM
ETLLKKPYKGKNKKNIRCLVMAPTRELAIQITEVFKSLGQYTKLNILCIYGGVEQESQIK
QLNDGVDILIATPGRMFDLNHQGHVDLSKTEILVLDEADHMLEKGFLKDIKDVIRLLPKY
RQTLFFSATIDEAIKKLAYSLVRNAIRIQISPKDPVSKNVRHGVGFVDMDDKRFFLEKIA
KEHPDEKILVFVRTQVRAERVFKAMERVDLKTVTIHGGKDQKERAEAMRLYKTGEVKILI
ATDVSARGIDIPNVQYVINYDMPDVPENYVHRVGRTGRGVEKGDAISFCSDGEKELLQEI
EEFMDKKIAVVEIARGDYANIVGFSEQKSTDWKTVMKEIAHDKEEYKKIKSKAVRKKAKK
KAKKK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgaaaagtataatatctctgtaagtttaaagaaaagcttagcagaaaaaggg
tttaaaaaacctacagatattcagtttaaatctattcctcctattttaaaaggagaagat
gttttggctattgcgcaaacaggtactggtaaaacagcagcgtttgctattccgataatg
gaaacgttgttgaagaaaccttataaaggaaagaataaaaaaaatattcgttgccttgtt
atggcacctacccgtgagttggctattcaaataacagaggtgtttaaatctttggggcaa
tatacaaagctaaatattctttgtatttatggtggagttgaacaagagtctcagattaag
caattaaacgatggcgtagatatattgatagctacacctggtagaatgtttgatttaaac
catcaaggtcatgttgatttgagtaaaacagaaattctagttttagatgaggctgaccat
atgttggaaaagggatttttgaaagatatcaaagatgtaattcgactacttcctaaatac
cgtcaaacactatttttctcagcaactattgatgaggcaattaaaaaattagcttattca
ttggttagaaatgcaattcgtattcaaatttcaccaaaagatcccgtctctaaaaatgtt
agacatggcgttggttttgttgatatggacgataagcgtttctttttagagaaaattgca
aaagaacatccagatgaaaaaatactagtttttgttcgtacccaagtacgtgctgaacgt
gtatttaaagctatggaaagagtagacttgaaaacagttactatccatggtggaaaagat
caaaaagagcgtgcagaagcaatgcgtttgtataaaacaggagaagtaaaaatacttatt
gctacagatgtttctgctagaggtattgatatcccaaatgtacaatacgtaattaattat
gatatgcctgatgttcctgaaaactatgtacaccgtgttggacgtactggtagaggagta
gaaaaaggtgatgcaatatcattctgttctgatggtgaaaaagaactccttcaagaaatt
gaagagtttatggataaaaagattgctgttgtagaaatagctagaggagattatgcaaat
attgttggcttctctgaacaaaaatctacggattggaaaacagtaatgaaagagattgcc
cacgacaaagaagagtataagaaaatcaagagtaaggcagtcagaaagaaagcaaagaaa
aaagctaagaaaaaataa
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