Flavobacterium keumense: MG292_02265
Help
Entry
MG292_02265 CDS
T09003
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fke
Flavobacterium keumense
Pathway
fke03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MG292_02265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fke03400
]
MG292_02265 (mfd)
Enzymes [BR:
fke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MG292_02265 (mfd)
DNA repair and recombination proteins [BR:
fke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MG292_02265 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
WGK95072
LinkDB
All DBs
Position
complement(502882..506244)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSKTIYSIYDNSPKTEQIASLLGQNNTPKVHLSGLVGSSISFVIRSVFKKSELPFLLILN
DKEEAAYYLNDLEQMIGDQDVLFYPASFRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVSYPEALFEKVVTRKELDKNTLKVAVGDQISIDFINEVLFEYEFKRVDFITEPGEFSVR
GGIVDVFSFSNDNPYRIEFFGNEVDSIRTFDVATQLSLEQQKKIAIIPNVENKLFQENRE
SFLDYISEKTVLFIQNTEGFLSQLDKQFGKAEEAFEKLSKDIKHARPEQLFLNQEQFIKR
ALDFSVVELASKSIFKTTKKFDFYIQPQPSFNKQFDLLLNNLNDNHFNGYKNYLFCSNDN
QAKRFHDIFETLDEANSENIRKQYNTIVLPLYQGFIDEENQITCYTDHQIFERYHKFSIK
NGYSKKQNITLKELTSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVY
VSIHSLHKISRYNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEKG
FQYAPDSYLQNELESSFIYEDTPDQTKATQEVKADMESDRPMDRLVCGDVGFGKTEVAIR
AAFKAVDNSKQVAVLVPTTILAYQHYRTFSERLKDMPVTVGYLNRFRTAKQKAETLKQLA
EGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIP
RTLQFSLMAARDLSVITSPPPNRYPIETNVVGFNEELIRDAISYEIQRNGQVFFINNRIE
NIKEIAGMIQRLVPNARVGIGHGQMDGAKLEELMLAFMNGEFDVLVATTIIESGLDVPNA
NTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFVCPPYSAMTEDARKRIQALEQFSELG
SGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEQND
IETKEYVKDLQLDTDFELLFPDEYINTVSERLLLYNELADIKDEASLLNYQNKLIDRFGP
LPKQAVSLLSSMKIKWIATRLGIEKLVMKQGKMIGYFVSDQQSDYYQSGRFHQVLQFVQK
QSALCKMKEKQTPNGLRLLLTFDNVKSIRRALELMELIGN
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaacaatctattctatttacgataattcacctaaaacagagcaaatagcttca
ctgttagggcaaaataatactccaaaagtacacctttcgggcttggttggatcttcgatt
tcatttgtaattcgttctgtttttaaaaaatcagaattaccgtttttactcattttaaac
gataaagaagaagccgcctattatttgaatgatttggaacaaatgattggcgaccaagat
gttttgttttatcccgcttcgtttcgtcgtccgtatcaaatagaagaaactgacaatgcg
aatgttttgcttcgcgcggaagtacttaatcgcatcaattcacgcaaaaaaccagccatt
attgtcagttatcccgaggcgctttttgaaaaagtagttactcgaaaggaattggataaa
aatacgctaaaagtagcggtgggcgatcaaatttcgattgattttatcaacgaggttttg
ttcgaatacgaattcaaaagagttgattttataaccgaacctggtgaattttctgttcgt
ggaggtattgtcgatgtgttttcattttcgaatgataatccgtaccgaatcgagtttttt
ggtaacgaagtcgatagtattcgaacctttgatgtggcaacgcaattgtcattggaacaa
caaaagaaaattgcgattattccgaatgtagaaaataagctttttcaagaaaatcgagaa
agttttttagattatatctcagagaaaacggttctttttattcaaaataccgaaggcttt
ttaagtcaattggacaaacaatttggcaaggccgaagaagcgtttgaaaaactatccaaa
gacatcaaacacgctagaccggagcagttattcttgaatcaagagcaatttataaaaaga
gctttggatttttcggtagtcgaattggcttccaagtccatttttaaaaccacaaaaaaa
ttcgatttttatattcagccgcaaccgtcttttaacaagcaatttgatttgttgttgaac
aatttgaacgacaatcattttaatggttataaaaattatttgttctgttccaatgataat
caagccaagcgttttcacgatattttcgaaactttggatgaggccaattcagaaaacatt
cgcaagcaatacaatacgatagtattgcctttgtaccaaggatttattgacgaagaaaat
caaattacctgttacacggaccatcagatttttgaacgctatcacaaattcagcatcaaa
aatggctattctaaaaaacagaatatcaccttaaaagagctgacttcgctttcggtcggt
gattatgtaactcatatcgatcacggaattggaaaattcgggggtttgcaaaaaattcaa
gtagaaggcaaaacacaagaagctattaagttggtttatgccgataatgacattgtgtat
gtgagtattcactctttacataaaatttcaagatacaatggcaaagacggcacgccacct
aaaatttataaattaggatcgaatgcttggaaagttttaaaacaaaaaaccaaagcacga
gtaaaacatattgcgttcaatttgattcagttgtatgccaaaaggcgtttggaaaaaggc
tttcaatatgcgcccgatagttatttgcaaaacgaattagaaagttcgttcatttacgaa
gatacgccagatcaaaccaaagccactcaagaggtaaaagccgacatggaaagtgaccgc
ccaatggatcgtttagtttgtggcgatgtaggttttggaaaaacagaagtcgctattcga
gctgcttttaaggcagtggataatagtaaacaagtcgctgttttagtacctaccactatt
ttggcataccaacattaccgcactttttcggagcgattgaaagacatgccagttacggtg
ggctatttgaatcggtttagaactgccaaacaaaaagcagaaactctcaagcaattggcc
gaaggaaaattggatattgtcattggaacccatcaattagtgaataaaaatgtggttttc
aaagacctcggattgttgattgttgacgaagaacaaaaatttggagtaaatgtcaaggac
aaactcaaaaccattgcggccaatgtagatacgttgactttaactgcaactcctatccca
agaaccttgcaattttcgttaatggctgcccgagatttatcggtaatcacgtcaccgccg
cccaatcgttatcctattgagacgaatgtggtgggattcaatgaagagttgattcgcgat
gccatttcgtatgaaattcagcgcaacggacaagtatttttcatcaataaccgcattgaa
aacatcaaggaaattgccggaatgattcagcgattggtgccgaatgcccgagtgggaatt
ggtcacggccaaatggatggagctaaactcgaagaactgatgttggcctttatgaatggt
gaatttgatgttttggtagcgacgaccattatcgaaagtggtttagatgtaccaaatgct
aacacgatttttatcaataatgccaataattttggactgtctgatttgcatcaaatgcga
ggtcgagtagggcgtagcaacaaaaaagcgttttgctattttgtttgtccgccatattct
gcaatgacggaagacgcgcggaaacgaattcaggctttggaacaatttagtgaattgggt
agtgggtttaacattgccatgaaagatttggaaattcgtggtgcaggagatttgttagga
ggagaacaaagtggtttcatcaacgaaattggttttgatacctaccaaaaaatcatgaac
gaagccattgaagagctgaaagaaaacgaattcaaggatttgtatccagagcaaaacgat
atcgaaaccaaagaatacgtcaaagatttgcaattggacacggatttcgaattgttgttc
cctgacgaatacattaataccgtttcagaacgactgctgttgtataatgaattagcagac
attaaagacgaagcttcacttttgaattatcaaaataagttgattgaccgttttgggcct
ttacctaaacaagccgtttctttgctaagcagcatgaaaatcaaatggattgctacccgt
ttaggaattgaaaaattggtcatgaaacaaggtaaaatgattgggtattttgtgtctgat
caacaatcggattattaccaatcgggtcgtttccatcaagtgcttcagtttgtacaaaag
caaagtgctttgtgtaaaatgaaagaaaaacaaactcctaacggattgcgattgttgttg
acttttgacaatgtgaaatcaattcgaagagcgttagaattaatggaattgatagggaat
tga
DBGET
integrated database retrieval system
