Ferrigenium kumadai: FGKAn22_16300
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Entry
FGKAn22_16300 CDS
T07187
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fku
Ferrigenium kumadai
Pathway
fku03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FGKAn22_16300 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fku03400
]
FGKAn22_16300 (mfd)
Enzymes [BR:
fku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGKAn22_16300 (mfd)
DNA repair and recombination proteins [BR:
fku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FGKAn22_16300 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Helicase_C_2
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
BBI99937
LinkDB
All DBs
Position
1752943..1756425
Genome browser
AA seq
1160 aa
AA seq
DB search
MLFTSRHSRPRYTQLQGSSDALALAQYATKASPLVVVAANALEAQRLVEEIPFFDPKLRV
HLLPDWETLPYDHFSPHQDLISERLATLHHIRSNACDVVIVPLTTVLYPLPPVEHLAAYT
FFLKRGERLDVAKLREQLTFAGYNHVQQVLTPGEYCVRGGIIDLFAMGSVLPYRIDLFDD
EIETIATFDVDSQRTLYPVPEIRMLPAREFPMDEKGQATFRQRFRERFEGDPSKSRIYKD
VSKGIAPAGIEYYLPLFFDKTATLFDYLPKNATLCLHHDVDEAIASFGKDAASRYNLLRG
DPQRPLLEPKELFLDSKQFFVRAKEFARIDIVQSTVRPKPVEGQEDEPSMLRQAQHERLH
DAPKTLTPCATAKLPNIAVDRRAEVPTQKFEDFLKSYQGRVLLLADSLGRREIMADYLQE
YGLAPATCEDYASFIAAQDKFMLCVAPLQNGFVLPDDNLAIVTETELYASQPRNRAARAA
KKSNVEGMLRDLSELKPGDPVVHEQHGIARYQGLVNLDLGEGENEFLLLEYAGEDKLYVP
VSQLHVISRYSGGAAESAPLHKLGSGAWDKAKRRAMQQVRDTAAELLNLYAQRATRKGHA
FNLNYHDYEAFAAGFGFEETADQAAAIEAVLIDLKCGKPMDRLICGDVGFGKTEVALRAA
FVAVMDGKQVAVLVPTTLLAEQHFQNFSNRFADFPVKIAELSRFRSAKETTQALKDLADG
KLDIIIGTHKLIQKDVKFHNLGLVILDEEHRFGVQQKERLKALRAEVDVLTLTATPIPRT
LAMSLEGLRDFSVIATAPQRRLSIKTFVSQYSQGVIREAVLRELKRGGQVYFLHNEVDTI
NNMLEKLETLLPEARIRVAHGQMGERDLEAVMRDFHHQRFNVLLCTTIIETGIDVPTANT
IIMNRADRFGLAQLHQLRGRVGRSHHQAYAYLLVDSMDGLTAQAKKRLEAIQAMEQLGSG
FYLAMHDLEIRGAGEVLGESQSGEMQEIGFSLYNDMLNAAIKSLKAGHEPDMAHPLGVTT
EINLHTPALLPNDYCGDIHQRLVIYKRLANCDTQQDLDDMQQELIDRFGLLPDPAQTLLD
SHRLRILAKPLGIMKVDASSEAIVIQFVPNPPIDPMKIITLIQSKRHIKMAGQDKLRIEL
KYGDLHQRVLAIKNFFGELK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcacctcccgacactcccgcccccgctacacccagttacaaggctcgtccgac
gcgctggcgctggcccagtacgccacgaaggcctcgccgctggtcgtagtcgccgcgaac
gcgcttgaagcgcagcggctggtggaggagatcccgttcttcgatccaaagctgcgcgtg
cacctgctgccggactgggagacgctgccctacgaccacttctctccgcaccaggacctg
atctccgagcggctcgcgacgctgcaccatatccgcagcaacgcctgcgacgtggtgatc
gtgccgctcaccaccgtgctgtatccgctgccgccggtggagcatctcgccgcctacacc
ttcttcctcaagcgcggcgagcggctggacgtcgccaaactgcgcgaacagctgaccttc
gccggatacaaccatgtgcaacaggtgctgacccccggcgaatactgcgtgcgcggcggc
atcatcgacctgttcgccatgggcagcgtgctgccctaccgcatcgacctgttcgacgac
gagatcgagaccatcgccaccttcgatgtggacagccagcgcaccctgtatcccgtgccg
gagatccgcatgctgcccgcgcgcgaattcccgatggacgagaagggacaggcgaccttc
cgccagcgcttccgcgagcgcttcgagggggacccgtcgaagtcgcgcatctacaaggac
gtgagcaagggcatcgccccggcgggcatcgagtattacctgccgctgttcttcgacaag
accgccacgctgttcgactacctgccgaagaatgcgacgctgtgcctgcatcacgacgtg
gacgaggccattgccagcttcggcaaggacgccgcctcgcgctacaacctgctgcgcggc
gacccgcagcgcccgctgctggaaccgaaggagctgttcctggattcgaagcagttcttc
gtccgcgcgaaggagttcgcgcgcatcgacatagttcaatcaaccgttcgccctaagcct
gtcgaagggcaagaggacgagccgtccatgcttcgacaagctcagcacgaacggcttcat
gatgcgccaaagacgctcactccctgcgcaaccgcaaagttgcccaacatcgccgtggac
cgccgcgccgaagtccccacgcaaaaattcgaggacttcctgaagagctatcagggccgc
gtgctgctgctcgccgacagcctggggcggcgcgaaatcatggcagactacctgcaggaa
tacggcctcgcgcccgccacctgcgaggactatgcatcgttcatcgccgcacaggacaag
ttcatgctgtgcgtcgcaccgctgcagaacggcttcgtcctgcccgacgacaacctcgcc
atcgtcaccgaaaccgagctctatgcctcgcagcccaggaaccgcgccgcgcgcgccgcg
aagaagagcaacgtcgagggcatgctgcgtgacctgtccgagctcaagccgggcgacccg
gtggtgcacgagcagcacggcatcgcgcgctatcagggactggtgaacctcgacctcggc
gagggcgagaacgagttcctgctgctggaatatgcgggcgaggacaagctctacgtgccg
gtctcgcaactgcacgtcatcagccgctacagcggcggcgcggcggaatccgcccccttg
cacaagctgggcagcggcgcgtgggacaaggcgaaacgccgcgccatgcagcaggtgcgc
gacaccgccgccgaactgctcaacctctatgcgcagcgcgccacgcgcaagggccatgca
ttcaacctgaactaccacgactacgaggcgttcgccgccggtttcggtttcgaggaaacc
gccgaccaggccgcggccatcgaggccgtactgatcgacctcaagtgcggcaagccgatg
gaccgcctaatctgcggcgacgtgggcttcggcaagaccgaggtcgcgttgcgcgccgcc
ttcgtcgccgtgatggacggcaagcaggtcgcggtgctggtgccgaccacgctgctcgcc
gagcagcacttccagaacttctcgaacaggttcgccgactttccggtgaagatcgccgaa
ctgtctcgcttccgctccgccaaggagacgacgcaggctttgaaggatctggccgacggc
aagctggatatcatcatcggcacccacaagctgatccagaaggacgtgaagttccacaac
ctcggcctggtgatcctcgacgaggagcaccgcttcggcgtgcagcagaaagagcgcctg
aaggcattgcgcgccgaagtggacgtgctcacgctcaccgcgacgcccatcccgcgcacg
ctggcgatgtcgctcgaaggcttgcgcgacttctcggtgatcgccaccgcgccgcagcgc
cgcctctcgatcaagaccttcgtcagccaatacagccagggcgtgatccgcgaggccgtg
ctgcgcgaactcaagcgcggcggccaggtgtacttcctgcacaacgaggtagacaccatc
aacaacatgctggagaagctagagacgctgctgccggaagcgcgcatccgcgtggcacac
ggccagatgggcgagcgcgacctggaagcggtgatgcgcgacttccaccaccagcgtttc
aacgtgctgctgtgcaccaccatcatcgagaccggcatcgacgtgcccaccgccaacacc
atcatcatgaaccgcgccgaccgcttcggcctcgcacagctgcaccagctgcgcggccgc
gtcgggcgctcgcaccaccaggcctatgcctacctgctggtggacagcatggacggcctc
accgcacaggcgaagaaacggttagaagccatccaggcgatggaacaactcggctccggc
ttctaccttgccatgcacgacctcgagatccgcggcgcgggcgaagtgctgggcgaatcg
cagagcggcgagatgcaggaaatcggcttttcgctctacaacgacatgctcaacgccgcg
atcaagtcgctcaaggccgggcacgagcctgacatggcgcacccgctgggtgtgaccacc
gaaatcaacctgcacacccccgccctgctgcccaacgactattgcggcgacatccaccag
cgcctggtgatctacaagcggctggcgaactgcgacacgcagcaagatctggacgacatg
cagcaggaactcatcgaccgcttcggcctgctgcccgatcccgcccagaccctgctcgac
agccaccgcctgcgcatcctcgccaagccgctcggcatcatgaaggtggatgcctcctcg
gaagccatcgtgatccagttcgtgcccaacccgcccatcgacccgatgaagatcatcacc
ctgatccagagcaagcgccacatcaagatggcgggacaggacaagctgaggatcgaactg
aaatacggcgacctgcaccagcgcgtgctggcaatcaagaatttctttggggagttgaag
tag
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integrated database retrieval system
