Flavisolibacter tropicus: SY85_09220
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Entry
SY85_09220 CDS
T04392
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fla
Flavisolibacter tropicus
Pathway
fla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SY85_09220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fla03400
]
SY85_09220
Enzymes [BR:
fla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SY85_09220
DNA repair and recombination proteins [BR:
fla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SY85_09220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
DUF5655
Motif
Other DBs
NCBI-ProteinID:
ANE50657
UniProt:
A0A172TV90
LinkDB
All DBs
Position
complement(2224090..2226813)
Genome browser
AA seq
907 aa
AA seq
DB search
MGLSLYNKKRNFSQTPEPSGKTKTSKSTLRFVIQKHDASSLHYDFRLEMDGVLKSWAIPK
GPSLNPADKRLAMMVEDHPYDYRNFEGVIPEGNYGAGTVIVWDEGYYTPVAGEQLSRKEQ
EQILLKELEMGSLKFILYGKKLNGVYTLRRMRKGEEKAWLLIKSKDEYATDDDVTAQEAS
VKSGKTLADIAAKKGVKLNHPKEQNATQQKGAKKAITAVKTAAGAKKISLTKRAGVLSPL
LKSYKDLIQAQPMPANIKPAFATLVDEPFSDPQWLYEIKWDGYRALAYLNNTKVKLISRN
NKPFTDKYAPVTAALKELGINAVFDGEIVAIDKNGLANFQLLQNWQNAPVQLQFYVFDIL
WLNGYDLTRLPLIERKKILCELIPPKDLILRYSDHVIGNGSAFYKAALKQGLEGIMAKRA
DSIYEAGKRTADWLKIKVNKRQEVVIAGFTVPRKTRKFFGALLLGVYEDDEFVYVGHTGS
GFNTKSLKEIYDRLQPLVTNKSPFKKVPKTNMPATWVKPQLVCEIKFTEWTKEHIARHPI
FMGLRTDKKAKDVRVEKEEKRSTIVKKAAGKKETKTPVKRTTKKKSSLSKNSKKISGLQL
QLENGANQTVTINKIDLSLTNLDKIYWPNEGFQKIDSINHYLRMAPYILPFLLDRPHSLN
RHPNGIGAPNFFQKDMKGKQPQWLETYTDYSESTKTNVEYLVCTNEASLIYMANLGCIEM
NPWHSRVNSWQYPDWCLIDLDPEGVSFNTVIEVAQVIKKILDASGAKGYCKTSGATGMHI
YIPLGAKYDFDQSKQLAELICKLVQQEMPNSTSMERSPAKRKEKVYLDFLQNKETQTAAA
PYSIRPRQGASVSTPLHWDEVKKGLAPTDYTIKNIYERVKAEGDLFKPVLGRGINLEKVI
QQLITIL
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgggcctttctttatacaataaaaagcgcaatttttcacagacgccagagccttctgga
aagacaaaaacttcaaagtctacgttacgctttgtgatacaaaagcacgacgcttctagc
ctgcattacgatttccgcttagagatggatggggtgctaaaaagctgggctattcccaaa
ggaccttcattgaaccctgctgataaacggttagcaatgatggtagaagatcatccatat
gactatagaaatttcgaaggcgtaatccctgaaggaaattatggtgctggtactgtaatc
gtgtgggatgagggatattatacaccagtggccggcgagcagctaagtaggaaagagcag
gagcaaattctgttgaaggagctagagatgggtagcctgaaattcattctttatggaaag
aaattgaacggtgtgtacacgttgagaaggatgagaaaaggagaggagaaggcttggtta
ttaataaagagtaaagacgaatatgctactgatgatgatgttacagcgcaagaggcttcg
gtgaagtcaggaaaaacattggccgatatagcagcgaaaaaaggcgtaaaactgaatcac
cccaaagaacaaaatgccactcaacagaagggggcaaagaaagctattactgcggtgaag
acagctgccggtgcaaagaagataagcctaacgaagagagctggggtactatctccacta
ttaaaatcgtataaagatctcattcaggcacaaccaatgcctgctaatataaaacctgca
tttgctactttggtggatgaaccttttagtgatccccaatggctatatgaaatcaaatgg
gacggttatagagctttagcgtatttgaataatactaaagtgaagttaatctcaagaaat
aataagccttttaccgataagtatgcgccggtaacagcggcattgaaagaattagggata
aacgctgtgtttgatggagagatcgtggctattgataaaaatggattagcaaactttcag
cttttacaaaactggcaaaatgcgccggtgcaattgcagttttatgtattcgatattctc
tggctcaatggatatgatcttacgcggctgcctttaatagaacgtaaaaagatcttgtgc
gagttaatacctccaaaagatttgattttgcgctatagcgatcatgtaattgggaatgga
agtgctttttataaagcggctttgaaacaaggattagaagggataatggctaagcgcgcc
gatagtatttatgaagcaggaaaacgtacagctgattggttgaagattaaagtgaataaa
agacaagaggtcgtaattgcaggatttacagtgccacgcaaaacccgtaagttctttgga
gccttactgcttggtgtatacgaagatgatgaattcgtgtatgtaggccatacaggcagc
ggttttaataccaaaagcctgaaagagatctatgaccgcttacagcccttggtaacgaat
aaaagcccatttaaaaaagtgcctaagactaatatgcctgccacttgggtaaaaccgcaa
ttggtttgtgagatcaagtttactgagtggaccaaagaacatattgcccggcatcccatt
tttatgggactgcgtacagataagaaggctaaagatgtccgtgtagaaaaagaagaaaag
cgaagcactatagtaaaaaaagcggctggaaaaaaggaaaccaagacacctgttaaaagg
acgactaaaaagaagtcttctttatctaaaaattctaagaaaatatctggcttgcaatta
cagcttgagaatggcgctaaccaaacagtaacaataaataaaatagacttatcattaacc
aatttagataagatctattggccaaatgaaggttttcaaaagatcgactcaattaatcat
tacctgcgaatggcgccatatatcttgccttttttgctagaccggccccactcgttaaat
cgtcatcctaacggtattggggctccgaatttctttcaaaaagatatgaaaggtaagcag
cctcaatggttggaaacctatacagactatagcgagtctactaagactaatgtagaatac
ctggtatgtacaaacgaagcgtcgctgatctatatggctaatttgggctgtattgaaatg
aatccttggcattccagagttaatagctggcagtatccagattggtgtctcattgacctg
gatcctgaaggcgtaagttttaatacggtaattgaagtggcacaggtaattaagaagatt
ctggatgcaagtggcgcaaaaggctattgtaaaacatcgggcgccacaggtatgcatatt
tatattccattgggcgcaaagtatgattttgaccaaagcaagcagttggcagaattgatc
tgtaaattagtgcaacaggagatgcccaatagtaccagcatggagcgcagtcctgctaag
cgcaaagaaaaagtgtatctggattttctgcaaaataaggaaacgcaaacagctgctgcc
ccatactctatccgtcctaggcagggggcttctgtttctacccccttacattgggatgaa
gtaaaaaaaggacttgcacctactgactatactatcaaaaatatttatgaaagggtgaag
gctgaaggtgatttatttaagccagttttaggaagaggtattaacttggaaaaagtgatc
cagcaattgattacgattctgtaa
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