Ferruginibacter lapsinanis: LK994_04835
Help
Entry
LK994_04835 CDS
T07839
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
flp
Ferruginibacter lapsinanis
Pathway
flp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK994_04835 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flp03021
]
LK994_04835 (rho)
03019 Messenger RNA biogenesis [BR:
flp03019
]
LK994_04835 (rho)
Transcription machinery [BR:
flp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LK994_04835 (rho)
Messenger RNA biogenesis [BR:
flp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LK994_04835 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
AAA
Mor
OB_RNB
ATPase_2
Spore_III_AA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UEG50799
LinkDB
All DBs
Position
1109629..1111251
Genome browser
AA seq
540 aa
AA seq
DB search
MYDILQLNDMVVPELLDIAEQQKIPNAKKLDKQELIYKILDKQAIMNAAVKNEDDDKPKR
KRIVKTSTANSTEDAEVMQEKPKPEPKLARKAEPVKKPIKKEEPKQEEEDEEELQPITSE
NSTIPPAIASLLQEEDIQQPEALPIDDNGRQYTPKQPQQRRDQSVFNIEFDGIILGEGVL
EMMPDGYGFLRSSDYNYLSSPDDIYVSPSQIKLFGLKTGDTVYGSVRPPKEGEKYFALLK
VETINGKSPDEVRDRVPFDYLTPLFPFEKLNLSTSASNYSTRIMDLFTPIGKGQRGLIVA
QPKTGKTMLLKELANAIAENHPECYLMIVLVDERPEEVTDMERSVKAEVIASTFDEPAEK
HVKVSTIALQKAKRLVECGHDVVILLDSITRLARAHNTVAPSSGKVLSGGVEANAMQKPK
QFFGAARKIENGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELQLDRKLSNRRIYPAI
DIVASSTRRDDLLLDKDTFQRMWVLRKHMADMNTEEAINTLLKNMKGTKDNIEFLTSMNG
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatattttacaactgaacgacatggttgttcccgagttgctcgatatagcggag
caacaaaaaattccaaacgcaaaaaaattagacaaacaggagcttatctataagatcctg
gataaacaagcaattatgaatgcagccgttaaaaacgaagacgacgataaaccaaaacgg
aaacgtattgtaaaaacgtcgacagctaatagtaccgaagatgcagaggttatgcaggaa
aaacctaaacctgaaccaaagttggccagaaaagcagaacctgtaaaaaagccaatcaaa
aaagaagaaccgaagcaggaagaagaggacgaagaagaattacagcctattaccagcgaa
aacagtaccatacctcctgccattgcttcacttttacaggaagaagatatccaacaaccg
gaagcattgccaatcgatgacaatggtcgtcaatacacgcccaaacaaccgcaacaaaga
agagaccaatcagttttcaatattgaatttgatggtattattttaggtgaaggggtgttg
gaaatgatgcctgatggatatggttttttacgcagtagcgattacaattatttatcttct
ccggatgatatttatgtatctccttctcaaataaaattatttggtttaaaaaccggcgat
accgtttacggaagtgttcgtcctcctaaagaaggtgaaaaatacttcgctttattaaag
gttgaaaccattaacggtaaaagcccggatgaagtaagagacagggttcctttcgattac
ctgactccgttatttcctttcgaaaaattaaatttatctacaagtgccagcaactacagc
acaaggataatggatctgtttactcctattggtaaaggacaacgtggattgatcgttgca
cagcctaagacaggtaaaacaatgctgttgaaagaactggcaaatgcaatcgcagaaaac
catcccgaatgttatttgatgatcgtattggtagatgaaagaccggaagaggtaactgat
atggaacgtagcgtaaaagctgaagtgattgcaagtacttttgatgaacctgctgaaaag
catgttaaagtaagtaccatcgcattgcaaaaagcaaaacgcttagttgagtgcgggcat
gatgtggtgatcctgttagatagtatcactcgtttggcaagagcacataatacggttgct
ccatcaagtggtaaagtattatcaggtggtgtggaagcaaatgcgatgcaaaaaccaaaa
caattttttggggcggctcgtaaaatagaaaatggtggatcgcttaccattattgcaaca
gcattggttgataccggtagtaaaatggatgaggtgatctttgaagaatttaaaggaacg
ggtaatatggaattacagttagatagaaaattatctaatcgtcgtatctatcctgcaatt
gatatcgttgcctcatctacccgtagggatgatttgttattggataaagacaccttccaa
cgtatgtgggtattgcgtaagcatatggcggatatgaatacagaggaagcgatcaatact
ttattgaaaaacatgaaaggcactaaagataatattgagtttcttacttcaatgaacgga
taa
DBGET
integrated database retrieval system
