Phnomibacter ginsenosidimutans: GLV81_15790
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Entry
GLV81_15790 CDS
T06320
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fls
Phnomibacter ginsenosidimutans
Pathway
fls03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GLV81_15790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fls03400
]
GLV81_15790 (mfd)
Enzymes [BR:
fls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GLV81_15790 (mfd)
DNA repair and recombination proteins [BR:
fls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GLV81_15790 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
PqqD
RecG_dom3_C
LPD39
AAA_22
Dsl1_C
Motif
Other DBs
NCBI-ProteinID:
QGW30093
UniProt:
A0A6I6GE34
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All DBs
Position
3648681..3651935
Genome browser
AA seq
1084 aa
AA seq
DB search
MEDAEDAAYFHNSLENITNALDLFYFPSSFKNSKNFRLLNSSHVMLRTEALTKIATGGNK
KILVTYPEAIFEKVVVSKTLSGNIISIKQAEELNVEGILELLVMLGFTRTDFVYEPGQFA
VRGGILDIYSFGNEKPYRIELFGNEVDSIRIFDPETQLSERKLLSVNIIPNIETQFEKEE
KTSLFEFMPENTVVWMNDWTFIHEKMQQEKEQLQIFLEYLKDNPGAALDNGDEEDKPLTK
ENVNEGDFVDIGAFEDLLALRHQIVFDGKCAASGKVNAETTVVPFNTKPQPSFNRNFNLL
IADLKSWEQKGFAIYLFAEQAKQLERIYNILTDLNTEIQFNPVAVSIHEGFIDEDLKLVC
YTDHQIFQRYHKFKVKQAFSKNKAITLKTLRELQPGDYVTHIDHGVGIFSGLEKMDVNGR
MQEAVRLRYKDGDLLYVNLSSLHKISKYTGKEGHVPKMNKLGSDVWNRLKEKTTKQIKDI
AEDLIKLYAERKAQKGFAHSADNYMQTELEASFMYEDTPDQAKASADVKKDMEKDSPMDR
LVCGDVGFGKTEVAIRAAFKSVVDGKQAAILVPTTILAYQHYKTFSKRLEDFPVTVDFIN
RFKSSKEKKETLQKLKEGKIDIIVGTHALLGKDVQFKDLGIMIIDEEQKFGVSAKEKLKQ
LRTTVDSLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPVQTEVQVFNEDNIRDAIYY
ETERGGQVFFIHNRVASLGEMAALIRGLCPDLSVAFAHGQMDGDQLEDTILDFMDKRYDV
LVCTNIVESGVDIPNVNTIIVNNAHQFGLSDLHQLRGRVGRSNKKAFCYLLAPPMSTLPH
DSRKRLQTLEQFSELGSGFQIAMRDLDIRGAGNLLGGEQSGFIAEIGFEMYHKILDEAIR
DLKRKQFKDLFKEEIAQQDDYVSDCTIETDLEILIPDTYVENIAERLSLYTRLDNSDSEE
ELQEFHQELSDRFGAVPPQVEDLFRTVRSRKIAVALGFEKMLLRDNVLKCFFVPNHESPY
FQSDVFMKIMQFIQTETNKAKLKQVGKNGILVVTDMTSMEKLLAFVQKLHAFATAKNNET
VLQP
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgcggaagatgccgcttacttccacaatagtctcgaaaacattaccaatgcg
ctggacctgttttactttcccagctcatttaaaaacagcaaaaactttcggttgctcaac
agcagccacgtgatgctgcggaccgaagcactcaccaaaatagccacgggcggcaacaag
aaaatattggtaacctaccccgaagccatttttgaaaaagtggtggtgagcaaaacactg
tcgggcaatatcatcagcatcaaacaagccgaagagctgaacgtcgaaggcatactagaa
ctgctggtgatgctcggttttacccgcaccgattttgtgtatgaacccggccagtttgcc
gtacgtggcggcattctcgacatctattcttttggcaatgaaaagccataccgcatagaa
ctttttggcaacgaagtagacagcatccgcatcttcgacccggaaacacagctcagcgaa
cgcaagctgttgtcggtaaatatcatccccaatattgaaacacaatttgaaaaggaagag
aaaacatcgctgtttgaatttatgccggaaaataccgtggtatggatgaacgactggaca
ttcattcacgaaaaaatgcagcaggaaaaagaacagctgcagatttttctggaatacctg
aaagacaatcctggtgcagctttggacaatggcgatgaggaagacaaaccgctcaccaaa
gagaatgtcaacgaaggcgattttgtagatattggtgcatttgaagacttgctggcactg
cgtcatcaaattgtgtttgatggaaaatgtgctgcatcaggcaaagtaaatgcagaaaca
accgtggtgcctttcaacaccaaaccacaacccagtttcaaccgcaatttcaatttgctc
attgccgatttgaaaagctgggaacaaaaaggatttgccatttacctgtttgctgaacag
gccaagcaactcgaacgcatttacaacatccttaccgacctcaacacagaaattcaattc
aatccggttgcggtcagcattcacgaaggttttattgatgaagacctgaaactggtgtgc
tacactgatcaccagattttccaacgctaccacaagttcaaggtgaaacaggctttcagc
aaaaacaaagccatcaccctcaaaaccttgcgggagctgcagcccggcgattatgttacc
cacatcgatcatggtgtgggcatcttcagcggattggaaaaaatggatgtaaacggccgc
atgcaagaagcggttcgccttcgctataaggatggcgatttgctctacgtcaatctatct
tcgttacacaagattagtaagtacaccggcaaagaaggccatgtacccaaaatgaataaa
ctgggtagcgatgtatggaaccgactgaaagaaaagacgaccaagcaaatcaaggatatt
gctgaagacctgattaaactttacgccgaacgcaaggcgcagaaaggctttgcccacagc
gccgacaactacatgcaaacggagctggaagcttcgttcatgtacgaagacacacccgac
caggccaaggccagtgccgatgtaaaaaaagacatggaaaaagacagccccatggaccga
ctggtgtgtggcgatgtaggctttggcaaaactgaagtagctattcgtgctgctttcaaa
agtgtggtggatggcaagcaggctgctattttggtgcccactaccatccttgcgtatcag
cactacaaaaccttcagtaagcggttggaagattttccggtgacggttgatttcatcaat
cgttttaaaagcagcaaggagaaaaaagaaacgctgcaaaaactaaaagaaggaaaaata
gacatcattgtaggtacacatgccctgctgggaaaagacgtgcagtttaaagacctcggc
atcatgattattgatgaagagcaaaagtttggtgtatcggccaaagaaaaactgaagcaa
ctacgtacaacggtagacagcttgacgctgacagcaacacccataccccgcactttgcaa
ttcagccttatgggtgcccgtgatttgagcatcatcaacacaccaccacccaaccggcaa
ccagtacaaaccgaagtgcaggtgtttaacgaagacaatatccgcgacgccatttactac
gaaacagaacgtggcgggcaggtgtttttcattcacaaccgcgtcgccagtttgggcgaa
atggcagctctcattcgtggcctctgccccgacctgagcgtggcttttgctcatggtcaa
atggatggcgaccagctcgaagacaccatcctcgattttatggacaaacgctacgatgtg
ctggtgtgtaccaacattgtggaaagtggtgtagacattccgaatgtgaacaccatcatc
gtcaacaatgcgcatcagtttggtttgagtgacttgcaccaactgcgtggccgtgtaggt
cgcagcaataaaaaagcattttgctacctgctggctccgcccatgagtacgctgccacac
gatagccgcaaacgcctgcaaacactggagcagttcagcgaactgggcagtggttttcaa
attgccatgcgagacctcgacatacgtggtgccggtaatttgctgggtggcgagcaaagt
ggtttcattgccgaaattggttttgagatgtaccacaaaattttggatgaagccattcgt
gatctcaaacgcaaacaattcaaagacctgtttaaagaagagatagcgcagcaagacgat
tacgtaagcgactgtaccattgaaaccgatctggaaatattgataccggatacttacgta
gaaaacattgccgaacgattgagtttgtacacccgcctcgacaactccgacagcgaagaa
gaactacaggaatttcatcaggaactgagcgaccgctttggtgccgtgccaccacaagta
gaagatttgttccgtaccgtacgcagccgcaaaattgctgtggcattgggtttcgagaaa
atgttgctccgcgacaacgtactcaaatgcttctttgtacccaatcatgaatcgccttac
ttccagagtgatgtgttcatgaaaatcatgcagtttatacaaaccgaaaccaacaaagcc
aaactaaaacaagtaggtaaaaatgggattctggtagtaacagatatgaccagcatggaa
aagctgttggcctttgtgcagaagctgcatgcctttgctacagcaaaaaataacgagact
gtattacagccataa
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