Fomitiporia mediterranea: FOMMEDRAFT_138567
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Entry
FOMMEDRAFT_138567 CDS
T03132
Name
(RefSeq) transcription factor Tfb2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
fme
Fomitiporia mediterranea
Pathway
fme03022
Basal transcription factors
fme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FOMMEDRAFT_138567
09124 Replication and repair
03420 Nucleotide excision repair
FOMMEDRAFT_138567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_138567
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_138567
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FOMMEDRAFT_138567
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FOMMEDRAFT_138567
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
18672282
NCBI-ProteinID:
XP_007262990
JGI:
Fomme1_138567
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MTDETAPPESPHKLLPFLEQQSQGALTRLYGRPSACLSVFRLLAPMERQLVMNLLWLESS
IPTATMSSWINRKGIKLYDSALSTLSRLHIIGNPSQKLNFNPTFKASLRQAITGGGTHRS
FGVPAVDGEEKRSSVTLEMLDAYAVERWETILHYMVSSGTGQMPARPSQGVLFLLERSGL
MSGNGGNMKITSFGFQFLLHSPHAQLWELLLQYLHMAEERQMDLIEVLGFLFMLSTMELG
RGYSTENLGETQKAMLEDLRDYGLIWQKKASSRRFYPTRLATTLTSSLPPLPTSGSGGAN
AQAQGFIILETNYRIYAYTDNPLQTAVLNLFVTLKYRFPNLVVGSLTRDSVRKALANGIT
ADQIIKYLTTHAHPQMRKNDPLIPVTVQDQIRLWELERNRLKSQEGYLYTAFASQADYEF
VLKYAKQLGVVLWENAAKRCFFGSLEGHANIRGFIERRTAGGGV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaaactgccccacctgagtcaccccacaaactactcccttttcttgaacag
caatcgcaaggcgctttgacaagattgtatggccgaccttcggcatgtctttcagtcttt
cgtctcctcgcccccatggagcgacagcttgtgatgaacttactttggcttgaatcctca
ataccaaccgctaccatgtcttcctggataaatagaaaggggataaaactatatgatagc
gcgctatcgacactatctcgactacatatcattggaaatccgtcacagaagctgaacttc
aatccaacctttaaggctagcttgcgtcaagccattacaggaggaggtacacaccgcagc
ttcggtgttcccgcggtggacggcgaagagaaacgttcaagcgtgacgcttgaaatgctc
gatgcttacgcagttgagcgatgggagacaattttacactacatggtctcatctggaaca
ggacagatgccggctaggccatctcagggcgtcctcttccttctagagcgaagcggactg
atgtccgggaacgggggaaacatgaagatcacgtcattcggcttccagttccttctgcac
tcgccgcatgcccagttatgggagcttctcttgcagtatttgcatatggcggaggagcgt
caaatggacctcattgaagtactgggcttcctcttcatgctatccacaatggagctgggc
cgtgggtattctaccgagaacctgggcgaaacacaaaaagccatgttagaagatctcagg
gactatggtcttatctggcagaaaaaggcgtcttcgcgtcgcttctatccgactaggctt
gcaactacccttacgtcttcattgcctccgcttcccacctctggcagcggaggtgccaac
gcacaggcccaaggattcataatcctagaaacaaattacagaatttatgcttacaccgac
aatccacttcagacagctgtcttgaacctcttcgtcacattgaaataccggttcccaaac
ctcgttgtcggctcgctgacgcgtgatagtgtcagaaaagctctggccaatggaatcacc
gctgatcagataatcaagtatctaacgacgcacgcacatccgcaaatgcgaaaaaatgac
ccacttattccagttactgtccaggaccagattcgtttatgggagctggagaggaatcga
ctaaagtcacaagaaggctacctgtacactgcgttcgcgtctcaagcggattacgagttc
gtcttgaagtatgccaaacagttgggtgtcgttctttgggaaaacgcggccaaaagatgc
ttctttggcagcctcgaaggccacgcgaacattcgcgggttcatagagcgtagaacagcc
ggaggcggagtctga
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