Flavobacterium magnum: HYN48_01075
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Entry
HYN48_01075 CDS
T06478
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fmg
Flavobacterium magnum
Pathway
fmg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYN48_01075 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fmg03400
]
HYN48_01075 (ligD)
Enzymes [BR:
fmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYN48_01075 (ligD)
DNA repair and recombination proteins [BR:
fmg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYN48_01075 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_OB_2
AsnRS_N
Motif
Other DBs
NCBI-ProteinID:
AWA28791
UniProt:
A0A2S0RCH1
LinkDB
All DBs
Position
292151..294730
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AA seq
859 aa
AA seq
DB search
MALEKYNQKRDFTKTKEPKGIKKDSDGALRFVVQKHAASHLHYDFRLEIDGVLVSWAVPK
GPSSDHEVKRLAMHVEDHPMDYIDFEGTIPEGEYGGGTVMVWDIGTYHAEGNDDISKDNL
TMKKQLKQKSVKVVLNGSKLKGSYHLFSIGADGKQWLLMKGNDRFADGKPFNELSILTKR
DFDAIAKGHHVWERTQKSATKKIVPVKKSERKEEEKMDHSAQADGAFSADDLAEAVKIKS
FPDEWRPQLATLTDAAFDNEDWIFEHKYDGYRALVQIHNKKATLVSRNGLKFNSKYPEIA
RTLDGTPQDMILDGEIVVEDTKGKSNFQWLQQYGDYPEKGTLKFYAFDVLYFQGYDLRNL
GLLLRKKILKAILPKAKNIIYSEHTTTLGTKAFEKAANEGGEGIIAKKSDSTYQTDKRSR
DWLKVKTNKQQEMVIGGFTDPQGGRKGIGALLCGYYDGNDLVYAGKVGSGFTEPILEDLR
RKLDRISRKSAPFSTVPKEKNAHWVSPKLIAQLKFSEFTDTGNMRHPVFLGLRADKDPKE
IKMEQPLVVTEKATQKGSPVTAKSSAASGKSRVEFSNLDKIFWPKEKITKGDVIDYYRSV
SEYILPYLKDRPQSLRRTPDGIKSEGFFQKDVAGKVPKWVKTRKIKSDSAEESVEWLICN
DEETLLFMANWGCIELNPWSSRVGSLNNPDYIIFDLDPKGAPMKSIIRTAHKVKETLDLL
KVPAYIKTSGGNGLHVFIPVLPKYTYEQTRQFSHLVSQMVHRDLPEITSLERLPAKRQGK
VYLDFLQNGRGKTMASIYSLRPREGAGVSTPLDWEEVNDALDLKAFNIKTIPERLQQKGD
LWAHFFDDAIDLKSILNKI
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggcactcgaaaagtacaaccagaaacgggatttcactaaaaccaaagagccgaaagga
atcaagaaagattctgatggtgccctgcggtttgtcgtgcagaaacacgccgcttcacac
ctgcattatgatttcaggctcgagattgatggtgtactggtgagctgggcggtcccgaaa
ggtccgtcgtctgaccatgaagtgaaacggcttgcgatgcatgtcgaggaccatccaatg
gattatatcgactttgaaggcactatccccgaaggtgaatatggtggtgggacggtgatg
gtctgggacatcggaacttaccatgcggaaggaaacgatgacatttcgaaggacaacctg
acgatgaaaaaacagttaaagcaaaaatccgttaaagtggttcttaacggcagcaagctc
aaagggtcttaccacctcttctccatcggcgctgacggaaagcaatggctgctgatgaaa
ggcaatgatcgttttgcagatggcaagcccttcaatgaactgtccattctcacaaaaagg
gattttgacgccatagcgaaaggtcatcatgtttgggagcgcactcaaaaatcggccaca
aaaaaaattgtccctgttaagaaatcagagcgtaaggaagaagaaaaaatggaccactcg
gcgcaagcggacggcgcattttcagcggatgacctcgccgaagcggtaaagatcaagagc
ttccctgacgaatggcggccccaacttgccacgctaaccgacgcggcatttgacaacgaa
gactggattttcgagcacaaatatgacggctaccgcgcgctcgtgcagattcacaacaaa
aaggccacgctggtatcgagaaacggattgaaatttaactcaaaatacccggaaattgcc
aggacgcttgacggcacaccgcaggatatgatattggacggtgaaatcgtcgtcgaggat
accaagggaaagagcaacttccagtggttgcagcaatatggcgattatccggagaaagga
acgctgaagttctatgcgtttgacgtgctttatttccagggatatgatttgcgaaatctc
ggacttttattacgcaagaaaatcctgaaggcgatattgcccaaagcaaaaaatatcatt
tattctgagcacaccacgaccttgggaacgaaggcctttgaaaaggcggcgaacgaaggc
ggcgaagggattatcgccaaaaagtcggattcgacctaccagaccgataaacgctcccgt
gactggcttaaggtcaagaccaacaaacagcaggaaatggtcatcggtgggttcaccgat
ccgcagggcggcaggaagggcatcggggcgcttctttgcgggtattacgacggcaatgat
ttggtatatgccggaaaagtgggcagcggttttaccgaaccaattcttgaagaccttcgg
agaaagctagatcgcataagccgtaaaagcgcgccattctcgaccgttcctaaagaaaaa
aatgcgcattgggtaagtccgaaactgatcgcccaactcaaattctccgaatttaccgat
acgggcaacatgcggcatccggttttcctgggcctgcgcgctgataaggatccgaaagag
attaagatggagcagccattagttgtcaccgaaaaagccacgcagaaagggtcgccggtc
accgcgaagtcttcggcagcatcaggcaaaagccgcgtagaattcagcaatctcgataag
attttctggcctaaggaaaaaatcaccaaaggcgatgtgatcgactattataggtcggta
tccgaatatatcctgccttatctgaaagaccggccgcaatcactgcgccgtaccccggac
ggcattaagagtgaaggtttttttcaaaaagacgtagccggaaaagtcccgaaatgggtt
aaaacccgaaaaataaaatcggacagtgctgaggagagcgtagagtggctgatttgcaat
gacgaagaaacgttgctttttatggccaattggggctgcatcgaactcaacccgtggagc
agccgtgtaggctctttgaacaatccggattacatcattttcgatctcgatcctaaaggc
gcacccatgaaaagcatcatcaggacggcgcacaaggtgaaagaaacgctggatttattg
aaagtaccggcgtacataaaaacatcaggcggcaacgggctgcacgtattcattccggtc
cttccgaaatacacctacgagcagaccaggcagttctcgcatctggtaagccagatggtc
caccgtgatctgccggaaattaccagtctcgagcgcctgcccgctaagcgccagggaaag
gtatatctggattttcttcaaaacggacgcggaaaaacgatggcaagcatttactcactg
cgtccgagagaaggtgccggtgtaagtacgccgctcgattgggaggaagtcaacgacgca
ctggacctgaaggcttttaacatcaaaaccatacccgaacggctgcagcagaagggcgat
ttgtgggcgcatttcttcgacgacgcgattgatctgaaatccatactgaataaaatctga
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