KEGG   Flavobacterium magnum: HYN48_01075
Entry
HYN48_01075       CDS       T06478                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fmg  Flavobacterium magnum
Pathway
fmg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fmg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HYN48_01075 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fmg03400]
    HYN48_01075 (ligD)
Enzymes [BR:fmg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HYN48_01075 (ligD)
DNA repair and recombination proteins [BR:fmg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HYN48_01075 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_primase_S DNA_ligase_OB_2 AsnRS_N
Other DBs
NCBI-ProteinID: AWA28791
UniProt: A0A2S0RCH1
LinkDB
Position
292151..294730
AA seq 859 aa
MALEKYNQKRDFTKTKEPKGIKKDSDGALRFVVQKHAASHLHYDFRLEIDGVLVSWAVPK
GPSSDHEVKRLAMHVEDHPMDYIDFEGTIPEGEYGGGTVMVWDIGTYHAEGNDDISKDNL
TMKKQLKQKSVKVVLNGSKLKGSYHLFSIGADGKQWLLMKGNDRFADGKPFNELSILTKR
DFDAIAKGHHVWERTQKSATKKIVPVKKSERKEEEKMDHSAQADGAFSADDLAEAVKIKS
FPDEWRPQLATLTDAAFDNEDWIFEHKYDGYRALVQIHNKKATLVSRNGLKFNSKYPEIA
RTLDGTPQDMILDGEIVVEDTKGKSNFQWLQQYGDYPEKGTLKFYAFDVLYFQGYDLRNL
GLLLRKKILKAILPKAKNIIYSEHTTTLGTKAFEKAANEGGEGIIAKKSDSTYQTDKRSR
DWLKVKTNKQQEMVIGGFTDPQGGRKGIGALLCGYYDGNDLVYAGKVGSGFTEPILEDLR
RKLDRISRKSAPFSTVPKEKNAHWVSPKLIAQLKFSEFTDTGNMRHPVFLGLRADKDPKE
IKMEQPLVVTEKATQKGSPVTAKSSAASGKSRVEFSNLDKIFWPKEKITKGDVIDYYRSV
SEYILPYLKDRPQSLRRTPDGIKSEGFFQKDVAGKVPKWVKTRKIKSDSAEESVEWLICN
DEETLLFMANWGCIELNPWSSRVGSLNNPDYIIFDLDPKGAPMKSIIRTAHKVKETLDLL
KVPAYIKTSGGNGLHVFIPVLPKYTYEQTRQFSHLVSQMVHRDLPEITSLERLPAKRQGK
VYLDFLQNGRGKTMASIYSLRPREGAGVSTPLDWEEVNDALDLKAFNIKTIPERLQQKGD
LWAHFFDDAIDLKSILNKI
NT seq 2580 nt   +upstreamnt  +downstreamnt
atggcactcgaaaagtacaaccagaaacgggatttcactaaaaccaaagagccgaaagga
atcaagaaagattctgatggtgccctgcggtttgtcgtgcagaaacacgccgcttcacac
ctgcattatgatttcaggctcgagattgatggtgtactggtgagctgggcggtcccgaaa
ggtccgtcgtctgaccatgaagtgaaacggcttgcgatgcatgtcgaggaccatccaatg
gattatatcgactttgaaggcactatccccgaaggtgaatatggtggtgggacggtgatg
gtctgggacatcggaacttaccatgcggaaggaaacgatgacatttcgaaggacaacctg
acgatgaaaaaacagttaaagcaaaaatccgttaaagtggttcttaacggcagcaagctc
aaagggtcttaccacctcttctccatcggcgctgacggaaagcaatggctgctgatgaaa
ggcaatgatcgttttgcagatggcaagcccttcaatgaactgtccattctcacaaaaagg
gattttgacgccatagcgaaaggtcatcatgtttgggagcgcactcaaaaatcggccaca
aaaaaaattgtccctgttaagaaatcagagcgtaaggaagaagaaaaaatggaccactcg
gcgcaagcggacggcgcattttcagcggatgacctcgccgaagcggtaaagatcaagagc
ttccctgacgaatggcggccccaacttgccacgctaaccgacgcggcatttgacaacgaa
gactggattttcgagcacaaatatgacggctaccgcgcgctcgtgcagattcacaacaaa
aaggccacgctggtatcgagaaacggattgaaatttaactcaaaatacccggaaattgcc
aggacgcttgacggcacaccgcaggatatgatattggacggtgaaatcgtcgtcgaggat
accaagggaaagagcaacttccagtggttgcagcaatatggcgattatccggagaaagga
acgctgaagttctatgcgtttgacgtgctttatttccagggatatgatttgcgaaatctc
ggacttttattacgcaagaaaatcctgaaggcgatattgcccaaagcaaaaaatatcatt
tattctgagcacaccacgaccttgggaacgaaggcctttgaaaaggcggcgaacgaaggc
ggcgaagggattatcgccaaaaagtcggattcgacctaccagaccgataaacgctcccgt
gactggcttaaggtcaagaccaacaaacagcaggaaatggtcatcggtgggttcaccgat
ccgcagggcggcaggaagggcatcggggcgcttctttgcgggtattacgacggcaatgat
ttggtatatgccggaaaagtgggcagcggttttaccgaaccaattcttgaagaccttcgg
agaaagctagatcgcataagccgtaaaagcgcgccattctcgaccgttcctaaagaaaaa
aatgcgcattgggtaagtccgaaactgatcgcccaactcaaattctccgaatttaccgat
acgggcaacatgcggcatccggttttcctgggcctgcgcgctgataaggatccgaaagag
attaagatggagcagccattagttgtcaccgaaaaagccacgcagaaagggtcgccggtc
accgcgaagtcttcggcagcatcaggcaaaagccgcgtagaattcagcaatctcgataag
attttctggcctaaggaaaaaatcaccaaaggcgatgtgatcgactattataggtcggta
tccgaatatatcctgccttatctgaaagaccggccgcaatcactgcgccgtaccccggac
ggcattaagagtgaaggtttttttcaaaaagacgtagccggaaaagtcccgaaatgggtt
aaaacccgaaaaataaaatcggacagtgctgaggagagcgtagagtggctgatttgcaat
gacgaagaaacgttgctttttatggccaattggggctgcatcgaactcaacccgtggagc
agccgtgtaggctctttgaacaatccggattacatcattttcgatctcgatcctaaaggc
gcacccatgaaaagcatcatcaggacggcgcacaaggtgaaagaaacgctggatttattg
aaagtaccggcgtacataaaaacatcaggcggcaacgggctgcacgtattcattccggtc
cttccgaaatacacctacgagcagaccaggcagttctcgcatctggtaagccagatggtc
caccgtgatctgccggaaattaccagtctcgagcgcctgcccgctaagcgccagggaaag
gtatatctggattttcttcaaaacggacgcggaaaaacgatggcaagcatttactcactg
cgtccgagagaaggtgccggtgtaagtacgccgctcgattgggaggaagtcaacgacgca
ctggacctgaaggcttttaacatcaaaaccatacccgaacggctgcagcagaagggcgat
ttgtgggcgcatttcttcgacgacgcgattgatctgaaatccatactgaataaaatctga

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