Fusobacterium mortiferum: C4N19_02585
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Entry
C4N19_02585 CDS
T05444
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fmo
Fusobacterium mortiferum
Pathway
fmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4N19_02585 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fmo03400
]
C4N19_02585 (mfd)
Enzymes [BR:
fmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4N19_02585 (mfd)
DNA repair and recombination proteins [BR:
fmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C4N19_02585 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Helicase_C_2
UB2H
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AVQ18064
LinkDB
All DBs
Position
complement(498363..501317)
Genome browser
AA seq
984 aa
AA seq
DB search
MKEYRGKIPFLLKEIGGKILYLCSSNRNIEDYYNVLSDIYGGNILKLENTQSKDELEKDN
YDLLEILKSEEDFIILLSLEAILREYFLEGKRYEIEIGKSLDIKELENSLEESGYNKEYM
VEERNQYSMRGDILDIFPKNSKYPVRIEFSFNNEVERIAYFDIETQKSVEKKNQVYMYIN
NNIEEKNSFLDFLNNRNDLKIFIENIDLLNYKLEEILSNSEIKEKSIKGIYNNFLKIAKS
VEINKFTHEELQNFESIEYVKKIGKDPLQKIKIVSDEEKRYREIFEGYNFEYEKYPLFEG
YKEENLLVLTDRELKGIRVRREKKDKGFQRYKNITEIQEGNYIIHENYGVGLYLGIEIID
GHDYLKIKYAGEDKLFVPIEGIGKIGKYISIDGEIPEIYNLGRKGFRKKREKIAEEMLQF
AKEIVEIQARRDLEAGYSFAPDNLWQEEFEESFPYKETPSQLQAIEDVKRDMESSRIMDR
VVCGDVGYGKTEVAIRAAFKAAIEGKQVVLMVPTTVLAQQHYERFTERMKNYPINIELLS
RLLTSKEQTQTLKKIKEGGVDIVIGTHRILSEDVEFKDLRLVIIDEEQKFGVKAKEKLKK
LRSKVDVLTLTATPIPRTLNLALLGIRDLSVIDTPPEGRKPINTFFVEGLEKNIREIIMK
EIAREGQVFYIFNSVKGIEKKTQELRKILPEYLKIDFVHGQMTPRDIKEKIKEFENGEID
ILVATTIIENGIDIENANTMIIDRADKLGLSQIYQLRGRVGRGNRQSYCYLLTKEYQTKK
AKEREESIKNLEEIDGGGLQLSMEDMRIRGAGEILGEKQHGILETFGYTLYMKMLQEEID
KIKGRFEEDIDDIEIKVNYPAFIPNEYIEKDEKIKVYRRITEVKSIIELENIKDELIDRF
GKMPVEAQGFFRYIGLKFRAKKLGIKNALEIKGKVESIIKFNSDKVNFDVLLKLIQEGLI
KYQKKDDTIEYNGTIEEFLNVYEQ
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagtatagaggaaaaatcccctttttattgaaagaaataggaggaaaaatacta
tatctttgttcttcaaatagaaatatagaagattattataatgtattaagtgatatatat
ggtggaaatatattaaaattagagaatactcaatcaaaggatgaattagaaaaagataat
tatgacttattagaaattctaaaatcagaagaagattttattattttactttctttagaa
gctattttaagagaatactttttagagggaaaaagatatgagatagaaataggaaaaagt
ttggatataaaagaattagaaaattctttagaagagagtggatataataaagagtatatg
gtagaagaaagaaatcagtacagtatgagaggagatatattagatatttttcctaaaaat
agtaagtatccagttagaattgagtttagttttaataatgaagtagagagaatagcatat
tttgatatagaaacccaaaaaagtgttgagaaaaaaaatcaagtttatatgtatataaac
aataatatagaagagaaaaatagttttttagattttttaaataatagaaatgatttaaaa
atttttatagaaaatatagatttattaaattataaattagaagagattctttctaatagt
gagattaaagaaaagagtataaaaggaatatataataattttttaaaaatagctaaatca
gttgaaataaataaatttactcacgaggaacttcaaaattttgagagtatagagtatgta
aaaaaaattggtaaagatccattacaaaaaataaaaatagtatctgatgaagaaaaaaga
tacagagagatattcgaaggttataattttgaatatgaaaagtatccattatttgaagga
tataaagaggagaatcttcttgtactaacagatagagaattaaaaggtattagagtaaga
agagaaaaaaaggataaaggatttcaaagatataaaaatataacagaaatacaagaagga
aactatattatacatgagaattatggagtaggtctatatctaggaattgaaataatagat
gggcatgattatttaaaaattaaatatgctggagaggataaactttttgttccaatagag
ggaataggaaaaataggaaagtatatatcaatagatggagagataccagaaatatataat
ttaggaagaaaaggttttaggaaaaaaagagaaaaaatagctgaagagatgttacaattt
gcaaaagaaatagtagaaatccaagctagaagagatttagaagctggatattcttttgct
ccagataatttatggcaggaggaatttgaagagagttttccatataaagagactccttca
caattacaggctattgaagatgtaaaaagagatatggaatcttcaagaataatggataga
gtagtatgtggagatgtggggtatgggaaaacagaggtagctataagagcagcttttaaa
gcagctattgaagggaaacaagtggtgcttatggttcctactacagttctagctcaacag
cattatgagagatttacagagagaatgaaaaattatccaataaatatagaattattaagt
cgtttattaacttctaaagaacaaactcaaactttaaaaaagataaaagaagggggagta
gatatagtaataggtactcatagaattttgtcagaagatgttgaatttaaggatttgaga
cttgtaattatagatgaggaacaaaaatttggagtaaaagcaaaggaaaaattaaaaaaa
ctaagaagtaaagtagatgtactaactttaactgcaactcctataccaagaactttaaat
ttagctcttttaggaataagagatttatcagtgatagatactccgccagagggaagaaaa
cctatcaatactttttttgttgaagggcttgaaaaaaatataagagagattattatgaag
gagatagcaagagagggacaggtattttatatttttaactcagtaaagggtatagaaaaa
aagactcaagagttgagaaaaattttaccagaatatttaaaaatagattttgtacatggt
cagatgactccaagagatataaaagaaaaaattaaagagtttgaaaatggagagatagat
atattagtagctactacaattatagaaaatggaatagatatagagaatgctaatactatg
attatagatagagctgataagctaggactttcacaaatatatcaattgagagggagagta
ggaagaggaaatagacaaagttattgttatcttctgactaaagagtatcaaacaaagaaa
gctaaagaaagagaagaatcaataaagaatcttgaagagatcgatggaggaggacttcaa
ctttcgatggaggatatgagaataagaggagctggagagatactaggagaaaagcaacat
ggaatattggaaacttttgggtatactctatatatgaagatgcttcaagaggagatagat
aaaataaaaggaaggtttgaagaggatatagatgatatagagataaaagtaaattatcca
gcgtttatacctaatgaatatatagaaaaagatgaaaaaataaaagtctatagaagaata
actgaagtaaagagtataattgaattagaaaatataaaagatgaattaatagatagattt
ggaaaaatgccagtagaggcacaaggattttttagatatataggtttaaaatttagagct
aaaaaattaggaataaaaaatgctcttgagataaaaggaaaagttgagtctattataaaa
tttaatagtgataaggtaaactttgatgttttattaaaactaatacaagaaggactaata
aaatatcagaaaaaagatgatacaatagagtataacggaacaatcgaggagtttttaaat
gtatatgaacaataa
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