Fusobacterium necrophorum subsp. funduliforme: BSQ88_00600
Help
Entry
BSQ88_00600 CDS
T06168
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fnf
Fusobacterium necrophorum subsp. funduliforme
Pathway
fnf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSQ88_00600 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnf03021
]
BSQ88_00600 (rpoB)
03400 DNA repair and recombination proteins [BR:
fnf03400
]
BSQ88_00600 (rpoB)
Enzymes [BR:
fnf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSQ88_00600 (rpoB)
Transcription machinery [BR:
fnf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSQ88_00600 (rpoB)
DNA repair and recombination proteins [BR:
fnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSQ88_00600 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF5887
Motif
Other DBs
NCBI-ProteinID:
AYV92264
UniProt:
A0A161PQP8
LinkDB
All DBs
Position
97075..100629
Genome browser
AA seq
1184 aa
AA seq
DB search
MGKLVERLNFGKIKERGIMPHFLEFQLNSYEDFLQMKVAPNNRENKGLESAFREIFPIES
SSNGEIRLEYVSYELHAAEPPLNDELECKKRGKTYSDSLKVRLRLFNKKSGNEIQESLVY
FGEVPKMTDRGTFIINGAERVVVSQLHRSPGVSFNKEVNIQTGKDLFSGKIIPYKGTWLE
FETDKNDFLSVKIDRKKKVLATVFLKAVDFFKDNIEIKEHFFEEKELNLSEFYEKYTHDP
GELLSVVRTKIENSFVKEAIFDEETGEIIAEEDAVISEALISKMIENKVSTISYWEVKPE
DILIANTIANDTTKNSDEAVTEVFRKLRPGDLVTVDSARSLIKQMFFNVQRYDLEPVGRY
KMNKRLKLEIDENEVLLTPEDVLGTIQYVIDLNNGESHVHTDDIDNLSNRRVRGVGELLL
MQIKTGLLKMSKMVREKMTIQDIETLTPQSLLNTRPLNALILDFFGSGQLSQFMDQSNPL
AELTHKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLAIYAKI
NQYGFIETPYIAVKDGIADLNDIRYLAADEEEGMFIAQADTKLGEHNELLEPVTCRIGPE
ILDVDAKRVHYLDISPKQVVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLRTEAPFIG
TGLERKVAVDSGAVVTTKVDGKVSYVDGKKIVIETEDKREYTYRLLNFERSNQSMCLHQS
PLVNLGDEVKAGDIIADGPATSKGDLALGKNILMGFMTWEGYNYEDAILISDRLRKDDVF
TSVHVEEYEIEARNTKLGDEEITREIPNVSEAALRNLDANGVIMIGSEVEPGDILVGKTS
PKGETEPPAEEKLLRAIFGEKARDVRDSSLRMPHGSKGTVVEILELSRENGDELKAGVNK
AIRVLVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLEDGTHLDVVLNPLGVPSRMN
IGQVLEVHLGMAMRSLNGGTHIATPVFDGATEEQIKDYLENQGHPRSGKVTLYDGRTGDK
FDNKITVGIMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEA
YGASNILQEMLTVKSDDVTGRTKTYEAIIKGEEMPDSDLPESFKVLLKEFQALALDVELC
DENDNVINVDEELNKEETTLEYSPSDILEMEEYEDEDDYEDEEE
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggggaaactcgttgaacgattgaattttggaaaaattaaagaaagaggaattatgcct
cattttcttgaatttcaattaaattcctatgaagatttcttacaaatgaaagtggctccc
aacaatagagaaaacaaagggttggagtccgcttttcgagaaatttttccgattgaatca
tcttctaacggagaaattcgattagaatatgtatcttatgaattgcatgctgcagaaccg
cctttaaacgatgaattggaatgtaaaaagagagggaagacctattccgattctttgaag
gtgagactgcgactgtttaacaaaaaaagtggaaatgagattcaggaatctttggtttac
tttggggaagttcctaagatgaccgatcgagggacttttatcatcaatggagcggaaaga
gttgtggtttcacaattgcatcgttctcccggagtatccttcaataaagaggtaaatatt
caaaccgggaaagatcttttctccggaaagattattccgtataaaggaacttggctggaa
tttgaaacggataaaaatgactttctgagtgtaaaaattgacagaaagaaaaaagtttta
gcaacagtgttcctaaaggctgtggattttttcaaagacaatattgaaatcaaagaacat
ttctttgaagaaaaggaattgaatttaagtgaattttatgagaaatatacccatgatccg
ggagaattattaagcgttgtccgaactaaaattgaaaacagttttgtgaaagaagctatt
tttgatgaagaaacaggggaaattattgcagaagaagatgccgtcatttcagaggctctt
atttcaaaaatgatagaaaataaagtttctacaattagttattgggaagtaaaaccggaa
gatattttgattgccaataccattgccaacgatacgacgaaaaattcagatgaagccgta
accgaagtttttagaaaattgagaccgggagatttggtaacggtagattctgcgagaagt
ttaatcaaacagatgttctttaacgtacaacgttatgatttggagcctgtgggacgttat
aaaatgaacaagagattgaaattggaaatcgatgaaaatgaagtgttattgactccggaa
gatgttttgggaacgatacaatatgtcattgatttaaataatggggaatctcatgtccat
accgatgatattgacaatttgtccaaccgtcgtgtcagaggagttggagaattgttattg
atgcaaattaagacgggacttctaaaaatgtcaaaaatggttcgagaaaaaatgaccatt
caggatattgaaaccttgactccacaatctcttttgaataccagacctttgaatgctttg
attttagatttcttcgggtccgggcaattgtctcaatttatggatcagtcgaatcctcta
gcggaattaactcacaagagaagaatttccgccttaggtcccggaggactttccagagaa
agagccggattcgaggtgcgtgacgtacacgattctcactatggaagaatttgtccgata
gaaacgccggaaggaccgaacatcggattgatcggatctttggctatctatgctaaaatc
aatcaatatggatttattgaaacaccgtatatcgcagtcaaagacggaattgcggatttg
aatgatattcgatatttggcagctgatgaggaagaaggaatgttcatcgctcaagccgat
acgaagttgggagaacataatgaattgttggaaccggtaacttgccgaatcggaccggaa
attttggatgtggatgcgaaaagagttcattatttggatatttctcccaaacaagtggta
tcagtctctgccggattgattcccttcttggaacatgacgatgccaaccgggcattgatg
ggatcaaacatgcaaagacaagccgttcctttactacgaacggaggctccttttatcgga
accggtttggaaagaaaggtagcggttgattccggagctgtggtaacgacaaaggtggac
ggaaaagtaagttatgtggacggaaagaaaattgtaattgaaacggaagataagagagaa
tatacttatcgtctattaaattttgaacgttcgaatcaatccatgtgtttacatcaatct
ccattggtaaatttaggagatgaagtgaaagccggagacattattgcggatggaccggca
accagcaagggagatttggctttaggaaaaaatatcctaatgggattcatgacttgggaa
ggatacaactacgaagatgcgattttgatttcagatcggctacgaaaggacgatgttttt
acttccgttcatgtggaagaatatgaaatcgaagcgagaaataccaaattgggagatgaa
gaaatcactcgtgagattccgaatgtttccgaagcggctcttagaaacttggatgccaat
ggagttattatgattggatcggaagtggagccgggagatattttggtgggaaagacttct
ccaaagggagaaacggaacctccggcagaagaaaaattactgagagctattttcggggaa
aaagcgagagatgttcgagacagttctctacgtatgcctcacggatcaaaaggaacggtt
gtggaaattttagaattgtctcgtgaaaacggagatgagttgaaagccggagtgaataag
gcaattcgtgtgttagtggcagaaaaaagaaaaattaccgttggggataaaatgtcaggt
agacatggaaacaaaggggttgtttcgagagtgttgccggcggaagacatgcctttctta
gaggacggaactcatttggacgttgtgttaaatccattgggagtaccatctcggatgaat
atcggacaggtcttggaagtacatttgggaatggcaatgaggtcattaaatggcggaact
catattgccactccggtatttgacggggcaacggaagaacaaatcaaagattatttggag
aatcaaggacatccgagaagcggaaaggtgaccttgtatgacggaagaaccggagataag
tttgacaacaaaattaccgtgggaatcatgtatatgttgaaattacaccacttggtagaa
gataaaatgcatgccagagctattggaccatattctttggtaacacaacaacctttagga
ggaaaagcacaattcggaggacaaagattgggagaaatggaagtatgggctttggaagca
tatggagcatctaatattcttcaagaaatgttgaccgtaaaatccgatgatgtgacagga
agaacaaaaacgtatgaagccatcatcaaaggggaagaaatgccggattctgatttaccg
gaatctttcaaagtattattgaaagaattccaagctctagcattggatgtggaattatgc
gatgaaaacgataatgtcatcaatgtcgatgaagagctgaataaggaagagaccaccttg
gaatattctccgtcagatatattagagatggaggaatatgaggatgaggatgattacgaa
gacgaagaagaatag
DBGET
integrated database retrieval system
