Flavobacterium nackdongense: E1750_10860
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Entry
E1750_10860 CDS
T06713
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fnk
Flavobacterium nackdongense
Pathway
fnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E1750_10860 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnk03019
]
E1750_10860 (rnr)
03016 Transfer RNA biogenesis [BR:
fnk03016
]
E1750_10860 (rnr)
Enzymes [BR:
fnk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E1750_10860 (rnr)
Messenger RNA biogenesis [BR:
fnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E1750_10860 (rnr)
Transfer RNA biogenesis [BR:
fnk03016
]
Prokaryotic type
tRNA degradation factors
E1750_10860 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
DUF5604
TBPIP
CENP-B_N
RecX
Motif
Other DBs
NCBI-ProteinID:
QBN19281
UniProt:
A0A4P6Y8R1
LinkDB
All DBs
Position
complement(2538373..2540553)
Genome browser
AA seq
726 aa
AA seq
DB search
MGKKLRKPVKKEKDFSEKIIKVLSQNANKGFNYKQIAAILDKDDTKSRNEIIRDLKILAS
QKKIIESEPGKYLIKAISQDYYEGKIDMTGRKTAYFVCPELEEDVFIPTNNLNRALDKDT
VKVYVYNRRKGRRPEGEVIEVVERVKTDFVGVIDIQKNFAFVSTANPKMYTDIFIPKDKL
GEAEQGDVVLVHIEDWPKRADSPFGNVIKVLGKPGEHDTEIHAILAEYGLPAEFPVDVEV
YAQKIDTSITEEEIKNRRDMRDTLTFTIDPKDAKDFDDALSFKKLENGHYEIGIHIADVS
HYLQEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPQEEKYTFSAIFEITETA
QVVNQWFGRTVIFSDQRFAYEEAQYIIETKNNTIPAEISITGSSYQVSDEIVAATLKMQD
LAKVLRRNRMNNGAISFDKVEVKFNLDEEGEPEGVYFKISKDANHLIEEFMLLANRKVAE
YIGKQKKTFIYRIHDEPNEDKLIAMQTVISKFGYKIDFRNKGDISKSLNALLNDVVGKKE
QNLIDTLAIRTMSKAKYSTDNIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQFYLDGRKS
VDEEKYEVKCLHSSTMEGLASNAERDSVKYMQVKYMQNHNDQEFLGVISGVTEWGIFVEI
IENKCEGMIRIREIKEDYYTFDEKQYALVGATTKALLQLGDEIYVKVKNADLVKKQLDFN
FIRRNE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagaaactgcgaaaaccagtaaaaaaagagaaagatttctctgaaaaaataata
aaagtactgtcacaaaatgctaataaaggattcaattacaaacaaatagctgctatttta
gacaaagatgataccaaaagcagaaacgaaatcatcagagatttaaaaattcttgcttcc
caaaagaaaattatcgagtccgaacctggaaaataccttatcaaagccattagccaagat
tactacgaaggaaaaatagatatgacaggtcgaaaaaccgcttattttgtttgtcctgaa
ttagaagaagatgtttttattcctaccaataatttgaacagagctttagacaaagacacg
gtaaaagtctatgtttataaccgtagaaaaggccgaagacctgaaggtgaagtgattgaa
gtggtcgaaagggtaaaaacagattttgttggtgttattgacattcaaaagaattttgcc
tttgtttcgactgccaatcctaaaatgtacaccgatatttttattccaaaagataaatta
ggcgaagcagaacaaggcgacgtggttttggttcatatagaagattggcccaaaagagcc
gatagtccatttggaaatgttataaaagtactgggaaaacctggagaacacgataccgaa
attcacgccatcttagcagaatacggtttaccagctgaatttcctgtcgatgtagaagtc
tatgcgcaaaaaattgacacttcgattaccgaagaagaaatcaaaaatcgtcgggatatg
cgtgatactttgacatttacgattgatccaaaggatgctaaagattttgatgatgccttg
tctttcaaaaagttagaaaacggtcattacgaaattggaattcatattgccgatgtatcg
cattatcttcaagaaggaacgattttagatgacgaagcctatcaacgagcgacttctgtg
tatttagttgatagagtagttccaatgttacctgaagtgttgtctaattttgcttgttcg
ttgcgtccgcaagaagagaaatataccttttctgcgatattcgaaattaccgaaactgct
caagtggtcaatcaatggtttggaagaaccgtgattttttcggatcagcgatttgcttac
gaagaggcacaatatatcatagaaacaaaaaacaatacaattccggctgaaatttctatc
acaggaagttcgtatcaagtttcggatgaaattgtcgcagccacgctaaaaatgcaagat
ttagcaaaagtactacgtagaaatagaatgaataatggtgccatttcttttgataaagtc
gaagtaaaattcaatttagacgaagaaggcgaaccagaaggtgtttatttcaaaatttcg
aaagatgccaatcatttgatcgaagaatttatgcttttagccaatagaaaagtggcggaa
tatattggtaaacaaaagaaaacttttatttatcgtattcacgacgaaccaaatgaagat
aaattaattgcgatgcaaacggtgatttctaaatttggatacaaaatagatttcagaaac
aaaggtgatatttcaaaatcattgaatgctttgttgaatgatgttgtgggtaaaaaagag
cagaatcttattgatacactggcaattagaacaatgagtaaagccaaatattcgacggat
aatatagggcattatggattggcttttgattattacagtcattttacttcacctattcgt
cgttatcctgatgttatggtgcatcgattgttgcagttttatcttgatggaagaaaatca
gtcgatgaagaaaaatacgaagtaaaatgtttacattcttctacaatggaaggtttagcc
tcgaatgctgaacgtgattctgtcaaatatatgcaagtaaaatatatgcaaaatcataac
gatcaggaatttttaggtgttatttctggtgtaaccgaatggggaatttttgttgaaatt
atagaaaataaatgcgaaggaatgatccgaattcgagaaataaaagaggattattacacc
ttcgatgaaaagcaatatgctttagttggcgcaaccacaaaggctttattgcaattagga
gatgagatttacgtaaaagtgaagaacgccgatttagttaaaaaacaattggattttaat
tttataagaaggaatgaataa
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