Fusobacterium vincentii 3_1_27: HMPREF0405_01612
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Entry
HMPREF0405_01612 CDS
T03625
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fnt
Fusobacterium vincentii 3_1_27
Pathway
fnt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0405_01612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnt03400
]
HMPREF0405_01612
Enzymes [BR:
fnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0405_01612
DNA repair and recombination proteins [BR:
fnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMPREF0405_01612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
EFG35328
LinkDB
All DBs
Position
1:complement(1784259..1787204)
Genome browser
AA seq
981 aa
AA seq
DB search
MEKKFRGEIPFWLKNKKNNLVYICSSNRNIDDYFFVLKDFYKGKILRIKKENEVGELKKY
NYDLLELINSNEKFIILISLDYFLEDYYSEANSIFIEKGKNLNIKDLEEKLIDAGFEKTY
MVAQRKEYSIRGDILDIFNINQDNPVRIEFFGNEVDRITYFDINSQLSIEKKDSIELYID
NNKNKKDFFSLMSMNKNKIEYYYENNDILQAKIKRFINENLDREEDILNKIAELSKIGIQ
IEIQKFSEEELKQFEVIDRVKKLSENTKITIYSEEATRYKEIFKGYSVKFEKYPLFEGYK
TDDKIILTDREIKGIRVKKERVEKKALRYKAVDEIKEQDYVIHENFGVGIFLGLENIEGQ
DYLKIKYADEDKLFVPVDSINKIEKFINISDVIPEIYKLGRKGFKRKKDKLSEDIEIFAK
EIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQSKAIEDVKRDMESGKVMDRLI
CGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFSERFKNYPVHIEILSRV
QSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDEEQKFGVKAKEKLKKIK
GNIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEYIDNNKNLIKDIIFSEI
SREGQVFYIFNSVKMIESKVKEIRELLPEYIKVGYIHGQMLPRDIKKNIQEFENGNIDVL
VATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRIGRSTKKSYCYMLMNENKTKNAK
KREESIREFDNLTGIDLAMEDSKIRGVGEILGEKQHGAVETFGYNLYMKMLNEEILKLKG
EAEEELDEVDVELNFPRFLPDSYIEKNEKVKIYKRALALKNLDELENLYNELEDRFGKIK
SEAKGFFEFIKIRIIARELGITTIKQDKENKDRILINFDEKKINVDKIIYLLSNKKIMYS
KFTRTIGYNGDIFEFFKLYSS
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaatttaggggagaaatcccattttggttgaagaataaaaaaaataatctt
gtatatatctgttcatctaacagaaatatagatgattatttttttgtgttaaaagatttt
tacaagggaaaaattctaagaataaaaaaagaaaatgaagttggagaattaaaaaaatat
aattatgatttattagaacttataaattcaaatgaaaaatttataattcttatttcctta
gattattttttagaagattattattcagaagccaatagtatttttattgaaaaaggaaaa
aatcttaatatcaaagatttagaagaaaagttaattgatgcaggttttgagaaaacatat
atggtggcacaaagaaaagaatattctataagaggggatattttagatatatttaatatc
aatcaagataatccagtgagaatagaattttttggaaatgaagtggatagaataacatat
tttgatataaattctcagttaagtatagaaaaaaaagacagtatagaattgtatatagac
aataataaaaacaaaaaagatttcttttctcttatgtctatgaacaaaaataaaatagag
tattactatgaaaataatgatatattacaagctaaaattaaaagatttatcaatgaaaat
ttagatagagaggaagatattttaaataagatagctgaactttctaagataggtatacag
atagaaatacaaaaattttcagaagaagaattaaagcaatttgaagttatagacagagtt
aaaaaattatctgaaaatacaaaaattacaatttattcagaagaagctactaggtacaaa
gaaatatttaagggctattctgttaaatttgaaaaatatccactttttgaaggatataaa
acagatgataaaataatattaacagatagagaaattaagggtatcagagtaaaaaaagaa
agagttgaaaaaaaagcactaaggtataaagctgttgatgaaataaaagagcaagattat
gtaatccatgaaaattttggtgtaggaatatttttgggcttagaaaatattgaaggacaa
gattatttaaaaataaaatatgcagatgaagataaactatttgttcctgttgacagtata
aataagatagaaaagtttataaatatttctgatgttatacctgaaatctataagttaggt
agaaaaggttttaaaagaaagaaagataaattaagtgaagatatagaaatttttgctaag
gaaattataaaaatacaggctaaaagaaatttaggaaatggttttaaattttcaaaagat
actgttatgcaagaagaatttgaggaaacttttccatttacagaaacacctgcacaatca
aaagctattgaagatgtaaaaagagatatggagtctggaaaagttatggataggcttata
tgtggagatgtgggctttggaaaaacagaggttgcaataagggcaacatttaaagctgtt
atggatggtaaacaagtaattcttttagtacctacaacagttttagcagagcaacattat
gaaagatttagtgaaagatttaaaaattatcctgtacatatagaaattttaagtagagtt
caatctaaaaaagagcaaactgaaagtcttaaaagaattgaaaatggttcagcagattta
gtaattggaactcacagattattgtcagatgatataaaattcaaagatgtgggacttctt
ataatagatgaagaacaaaagtttggagttaaagcaaaagaaaaattaaaaaagattaaa
ggtaatatagatgttttgactttaacagcaactcctattcctagaactttgaatttatca
ctattaggaattagagatttatctgtaatagatacttcaccagaaggcagacaaaaaatt
catacagagtatatagacaataataaaaatttaatcaaagatataatcttttctgaaatt
tcaagagaagggcaagttttttatatttttaattctgtaaaaatgatagaaagcaaagta
aaagaaataagagaattattgccagaatatattaaggttggctatattcatggacaaatg
ttgccaagagatattaaaaaaaatattcaagaatttgaaaatgggaatatagatgtttta
gttgcaacaactattatagaaaatggtatagatatagaaaatgctaatactatgataatt
gaaggagttgaaaaactaggtctatcacaggtttatcaattaagaggaagaatagggaga
agcactaaaaaaagttattgctatatgcttatgaacgaaaataaaactaaaaatgctaag
aaaagagaggaaagtataagagaatttgataatttaacaggtatagatttagcaatggaa
gattcaaaaatcagaggtgttggagagattttaggggagaaacaacacggggcagttgaa
acttttggttataatctatatatgaaaatgttaaatgaagaaatcttaaaattaaaggga
gaagcagaagaagaacttgatgaagttgatgttgaacttaatttcccaagatttttacca
gatagttatatagaaaaaaatgaaaaggtaaaaatatataaaagagccttagctttgaaa
aatctagatgaattagaaaatttgtataatgaattagaagatagatttggaaaaattaaa
tctgaagcaaaaggattttttgaatttataaaaataagaataatagcaagagaattagga
attacaactataaaacaagataaagaaaataaagacagaattttaattaattttgatgaa
aagaaaataaatgtggataagattatttatttgctaagtaataaaaaaataatgtattca
aaatttacgagaactattggatataatggagatatttttgaattttttaaattatattca
tcataa
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