Fusobacterium nucleatum subsp. nucleatum ATCC 25586: FN0019
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Entry
FN0019 CDS
T00077
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fnu
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Pathway
fnu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fnu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FN0019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnu03400
]
FN0019
Enzymes [BR:
fnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FN0019
DNA repair and recombination proteins [BR:
fnu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FN0019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAL94232
UniProt:
Q8RH90
LinkDB
All DBs
Position
656689..659634
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AA seq
981 aa
AA seq
DB search
MEKKFRGEIPFWLKNKKNNLVYICSSNRNIDDYFFVLKDFYKGKILRIKKENEARELKKY
NYDLLELINSNEKFIILISLDYFLEDYYSEANSIFIEKGKNLNIKDLEEKLIDADFEKTY
MVAQRKEYSIRGDILDIFNINQDNPVRIEFFGNEVDRITYFDINSQLSIEKKDSIELYID
NNKNKKDIFSLMSMNKNKIEYYYENNDILQAKIKRLINENLDREEDILNKIAELSKIGIQ
IEIQKFSEEELKQFEVIDRVKKLSENTKITIYSEEATRYKEIFKGYPVKFEKYPLFEGYK
TDDKLILTDREIKGIRVKRERVEKKALRYKTVDEIKEQDYVIHENFGVGIFLGLENIEGQ
DYLKIKYADEDKLFVPVDSINKIEKFINISDVIPEIYKLGRKGFKRKKAKLSEDIEIFAK
EIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQSKAIEDVKRDMESGKVMDRLI
CGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFSERFKNYPVHIEILSRV
QSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDEEQKFGVKAKEKLKKIK
GDIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEYIDNNKNFIKEIILSEI
SREGQVFYIFNSVKRMESKVKEIRELLPEYIKVSYIHGQMLPRDIKKNIQDFENGNVDVL
VATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRIGRSTKKSYCYMLTNENKTKNAK
KREESIREFDNLTGIDLAMEDSKIRGVGEILGEKQHGAVETFGYNLYMKMLNEEILKLKG
EAEEELDEVDVELNFPRFLPDNYIEKNEKVKIYKRALALKNLDELENLYNELEDRFGKIK
SEAKGFFDFIKIRIIARDLGITTIKQDKENKDRILINFNEKKINVDKIIYLLSNKKIMYS
KFTRTIGYNGDIFEFFKLYSS
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaatttaggggggaaatcccattttggttgaagaataaaaaaaataatctt
gtgtatatctgttcatctaacagaaatatagatgattatttttttgtactaaaagacttt
tacaaaggaaaaattcttagaataaaaaaagaaaatgaagctagggaattaaaaaaatat
aattatgatttattagaacttataaactcaaatgaaaaatttataattcttatttccttg
gattattttttagaagattattattcagaagccaatagtatttttattgaaaaaggaaaa
aatcttaatatcaaagatttagaagaaaagttaattgatgcagattttgaaaaaacatat
atggtagcacaaagaaaggaatattcaataagaggggatattttagatatatttaatatc
aatcaagataatcctgtgagaatagaattttttggaaatgaagttgatagaataacatat
tttgatataaattctcaattaagtatagaaaaaaaagatagtatagaattgtatatagac
aataataaaaataaaaaagatatcttttctcttatgtctatgaacaaaaataaaatagaa
tattattatgaaaataatgatatattacaagctaaaattaaaagacttatcaatgaaaat
ttggatagagaagaagatattttaaataaaatagctgaactttctaagataggtatacag
atagaaatacaaaaattctcagaagaagaattgaagcagtttgaagttatagatagggtt
aaaaaattatctgaaaacacaaaaattacaatttattcagaagaagccactagatataaa
gaaatatttaaggggtatcctgttaaatttgaaaaatatccactttttgagggatataaa
acagatgataaattgatattgacagatagagaaatcaaaggcattagagtaaaaagagaa
agggttgaaaaaaaagcactaaggtataaaacagttgatgaaataaaagagcaagattat
gtaatccatgaaaattttggtgtgggaatatttttaggcttagaaaatattgaagggcaa
gattatttaaaaataaaatatgcagatgaagataaattatttgttcctgttgacagtata
aataagatagaaaaatttataaatatttctgatgttatacctgagatttataagttaggt
agaaaaggatttaaaagaaagaaagctaaattaagtgaagatatagaaatttttgctaag
gaaattataaaaatacaagctaaaagaaatttaggaaatggttttaaattttcaaaagat
actgttatgcaagaagaatttgaggaaacttttccatttacagaaaccccagcacaatca
aaagccattgaagatgtgaaaagagatatggagtctggaaaagttatggatagacttata
tgtggagatgtgggttttgggaaaacagaggttgcaataagggcaacattcaaagctgtg
atggatggtaaacaagtaattcttttagtgcctacaacagttttggcagaacaacattat
gaaagatttagtgaaagatttaaaaattatcctgtgcatatagaaattttaagtagggtt
caatctaaaaaagaacaaactgaaagtcttaaaagaattgaaaatggttcagcagactta
gtaattggaactcatagactattgtcagatgatataaaattcaaagatgtagggcttctt
ataatagatgaagagcaaaagtttggagttaaagcaaaagaaaaattaaaaaagataaaa
ggtgatatagatgttttaactttaacggcgacccctattcctagaactttgaatttatct
ttattaggaattagagatttatctgtaatagatacttccccagaaggtagacaaaaaatt
cacacagagtatatagacaataataaaaattttattaaagaaataatcctttctgaaatt
tcaagagaaggacaggttttttatatttttaattctgtaaaaagaatggaaagcaaggta
aaagaaataagagagttattgccagaatatattaaagttagttatattcacgggcaaatg
ttgccaagagatataaaaaagaatattcaagattttgaaaatggtaatgtagatgttttg
gtggcaacaacaattatagaaaatggtattgatatagaaaatgctaatactatgataatt
gaaggagttgaaaaactaggtctatcacaagtttatcaattaagaggaagaataggtaga
agcactaaaaaaagttattgttatatgcttacgaacgaaaataaaactaaaaatgctaag
aaaagagaggaaagtataagagaatttgataatttaacaggtatagatttagcaatggaa
gattcaaaaatcagaggtgttggagagattttaggggagaaacaacatggggcagttgaa
acttttggttataatctatatatgaagatgttaaatgaagaaatcttaaaattaaaagga
gaagctgaagaagaacttgatgaagttgatgttgagcttaattttccaagattcttacca
gataactatatagagaaaaatgaaaaggtaaaaatttataaaagagccttagctttgaaa
aatttagatgaattagaaaatttatataatgaattagaagatagatttggaaagattaaa
tcagaggcaaaaggattttttgattttataaaaattagaataatagcaagagatttagga
attacaactatcaaacaagataaagaaaataaagatagaattttaattaattttaatgaa
aagaaaataaatgtggataaaattatttatttgttgagcaataagaaaataatgtattca
aaatttacgagaactattgggtataatggagatatttttgaattttttaaattatactca
tcataa
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