Frankliniella occidentalis (western flower thrips): 113212505
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Entry
113212505 CDS
T07591
Name
(RefSeq) endoribonuclease Dcr-1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
foc03036
]
113212505
Chromosome and associated proteins [BR:
foc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113212505
microRNA pathway
RISC loading complex
113212505
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dsRBD
Dicer_platform
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
113212505
NCBI-ProteinID:
XP_052133300
UniProt:
A0A9C6XCA2
LinkDB
All DBs
Position
Unknown
AA seq
2096 aa
AA seq
DB search
MAYHFNDNVCTKSFTPREYQVELLDNARDHNIIICLGTGTAKIFITSKLIVESAIEVRKY
KKYTIYLAHSANVVSYMATYLEYLTDLSVQGFTEWDPKNFQKLQTNKQVLVMTPDICMNA
LNEGFVNLSCVNLLIIDQCQLVMNVNNPLQQLMKIYGSLNGFKPRLLGLTPALFSSGCDP
SRLEWALNQLETALHSSVETASEIVSLLRFSTHPTERVLECAIHEPGDIDNNLYQQIEEA
LTFLNDHRYDPFEIYDEEYREDLQGIPDPKIDPLNIMNEFLDILRTLGPYCADRAALIFL
VQIEKLKIKTPYERHYLLLCMVSSVMIKIRAICEYEFQQYDDKEKIYKFCSPKVLRLLEV
LKQFKPTQADCEDSAESTSQRSNPLKAIEGRPSDEKGSANPQNSPTPAETPTEEKAAEEQ
TKSAEVAKEEQAEIHLPPRQPLKAVGRSSRGRGRGRAGRYQRKGNTDGPRRGPFDPLDPD
ILCGVIFVRSHLTAKILFYLLNEVRRHDEKLNYLGVQYTVEKTADPVTEPRDAEQEHRKQ
EEVLKRFRMHECNLLIATSVLEEGIELPRCNLVVRFDEPQSYRSYVHCKGRARAADAHFI
LLIEKRHSSAFIRQLAEYLTIEQVLLKKCANREGSEEEEKEADLYNSFVKPYSPTGSTDK
SSCASLSNAIALVNRYCAKLPSDTFTKLTPLYSMQQSMADDGTKLYTCTLRLPINSPVKQ
NIKGPPVPNPILAQRLAAIETVRILHVSRELDDNLMPIGKESFRLTNDEANGGIVLEPDE
IEEASIPWDSNEPRPGTTKRRQYYYKRVAEALTDCRPVAGSKALLYHVSMILTCPLPDEQ
NTRGRSIYAPEDSAQGFGILTLKPIPKVCPFPIFTRSGEVSVSLELNPDPVELTEIHVEK
IVTFLNYTFTNVLRLQKYLMMFDPHAAENSYFIVPTRKELQDSAAVVDWEFLDRIYDKRN
LSPKPVAECERKDFKFDACKYQDAVVMPWYRNQDQPQYFYVAEICYQLSPKSSFPSSENY
KSFEDYYFKKYSLNIQNREQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRE
NLEQKQILVPELCTVHPFPASLWRKAVCLPCILYRINALLLADQLRRVVATSIGLGSLEL
PQDFYWKPLNFGWTLADVLKRSREVKAKEESLKDKDTDTENSQECPVKSPPDAEIANEKL
PQPNRVPSEGTEDKKKTDSPWIDIGTWSNEMAAHPAPGPDPDIDFFDPNAALPGNVTMLP
NIPDMGGGWGSGGGPTGAAPGTGWGSPTSHQAEPGTGGGLRSGPRHPGAGGPSASPWGVG
PGRATSANFQPEPCAAPDSDSYSDLTDDDDEEEEDSGSDCGAGGGGLRIEYKPDNTAEAV
EDAGKEGGSRLSVFQAPMEPPWDWYRSREPDRQEVCCGFEESIKINTQVIQTDGRLILSD
NPYILVRAPGDQAAIIQSDVDETKLRALKYISEFNNNRSDNNPICSSGSSAVAERAQNMP
SLSEDDLGFKFSFDAQPDLDGHPGPSPAIILQALTMSNANDGINLERLETIGDSFLKYAI
TTFLYCTYDCIHEGKLSHLRSKQVSNLNLYRLGRRKVFGESMIATKFEPHDNWLPPCYYV
PRDLEKALIQAGLPACHWNSADLPSLRNLTLEEIQEKVNERKETLKLANISAETDSDDDD
VPLSAALQHKKLVQFQQQQQLKLLQQQKEIEKNLKAIEGEAGEEQKELNTDNTPSDTDPL
VLLDSMPCFIPYNLITQHSIPDKSIADCVEALIGAYLISCGPRGALLFMAWLGIKVLPQE
ELSGLDGNVKIQYGSLQPPNSPLLRHVTNPEGQLEILLDGFEKFEQKIHYRFKDRSYLLQ
ALTHASYSPNQLTDCYQRLEFLGDAVLDYLITRHLYEDWRQHSPGALTDLRSALVNNTIF
ASLAVKFGFHQFFRHLSPGLNEVIDRFVRIQEENGHAISEEYYLIEEEECEEAEDVEVPK
ALGDVFESVAGAIFLDSGMSLDAVWRVYYRMMRPEIEQFSTNVPKSPIRELLEMEPETAK
FGKPEKLADGRRVRVTVEVFSKGTFKGIGRNYRIAKCTAAKCALKQLKKREMMRSK
NT seq
6291 nt
NT seq
+upstream
nt +downstream
nt
atggcttaccatttcaatgacaatgtctgcaccaaatcattcactccccgggagtaccag
gtggaactactcgataatgctcgagatcacaatatcattatatgccttgggaccgggacc
gccaaaatatttatcacatcaaaactcattgttgaatctgcaattgaagtgcgcaaatat
aaaaagtacacaatttatttggcgcacagtgcaaatgttgtttcttacatggcaacttat
ttagaatatctcacagacctctctgttcaggggtttactgaatgggaccctaagaatttt
cagaaacttcaaactaataagcaggttctggtgatgacgcccgacatttgtatgaacgct
ttaaatgaaggttttgtgaacctcagttgtgtcaacctgctcataattgatcagtgtcag
cttgtgatgaatgtcaataatccattacagcaattaatgaaaatatatggatcattgaat
ggattcaagcctcggctgttggggctcactccagcccttttcagttcaggctgtgaccca
agtaggcttgagtgggctcttaatcaacttgaaacagctctacactcttctgtggaaaca
gccagtgaaatagtctcattattaagatttagcacgcaccccactgaacgagtcttggaa
tgtgctattcatgaacctggggacatagataacaatctttaccaacaaattgaagaagct
cttacttttctaaatgaccatcgttatgatccatttgaaatatatgatgaagaatataga
gaagaccttcagggtatacctgatcccaagattgatccattaaacataatgaatgaattc
ttagacattctaagaacattgggaccctactgtgctgaccgagcagctctgatattccta
gtccaaattgaaaagctaaagataaagactccatatgaacgacactatcttctattgtgt
atggtttcctcagtgatgatcaaaatcagggcaatttgtgagtatgaatttcagcaatac
gatgataaagaaaagatttataaattctgctcgccaaaagttttgagacttttagaagtt
ttgaaacaatttaaaccaacacaagcagattgtgaagattctgccgaaagcacctctcaa
agaagcaaccctctaaaagcaattgaggggaggcctagtgatgagaaaggttctgcaaat
cctcagaactcacctactccggcagaaacccctacagaagagaaagcagcagaggaacaa
actaaatcagcagaagtagccaaggaggaacaggcagaaattcatctacctccgaggcag
cctctcaaagctgtggggagatcatctagaggtagaggaaggggaagagctggcagatat
cagcgcaaaggaaacactgatggacctcgtaggggaccatttgatcctcttgacccagac
atcctgtgtggtgtaatttttgttcggagtcacctcactgccaaaatccttttctatctt
ttaaatgaggttcgcagacatgatgagaaattaaattatcttggagtccagtacactgta
gagaaaacagctgaccctgtgactgaaccaagagatgcagaacaggagcaccgcaagcaa
gaggaagtattaaaaagattccgaatgcatgagtgtaatttactcatagctacatcagtt
ttggaggaaggaatagaacttccacgatgtaatctagttgtgcggtttgatgaacctcag
tcatacagatcatatgtacattgcaaagggcgtgccagagccgctgatgctcacttcatt
ttgctgatagagaagaggcattcctctgcatttatacgtcagcttgctgaatatttgact
attgagcaggtactgttaaagaaatgtgcgaatcgtgagggctcggaggaggaagagaaa
gaggcagatctctataactcctttgtgaaaccttactctccaactggatcaacagataag
agttcttgtgcttctctctctaatgccattgcactggtcaatcgctactgtgccaagtta
ccaagtgataccttcacaaaattgacccctctctattctatgcaacaatctatggctgat
gatgggaccaaattgtacacttgcacattacgactgcctattaattcccctgtaaagcag
aacattaagggtcctcctgtaccaaaccctattctggcccaacggcttgcagctatcgag
acagtgcggatattacacgtgtcacgggaacttgatgacaatctcatgcctattgggaaa
gaaagctttcgtcttactaatgacgaagccaatggtggcatagttctagaaccggatgaa
attgaagaggcctcaatcccatgggattcaaatgaaccccgcccaggaacaaccaagcgt
cgacaatattattataaacgggttgcagaggccctcactgactgcaggcctgtggctggt
tcaaaagccctactttaccatgtaagcatgattcttacttgtcctctaccagacgaacaa
aatacaagaggccgttctatatatgctcctgaggatagcgcgcaaggatttggaatacta
actttgaaacccatcccaaaggtctgcccctttcccatatttactcgatctggagaggta
tcagtcagcctggagctcaatcctgacccagttgaattaactgagattcatgttgaaaaa
attgttacctttttgaattacacctttaccaatgtcttacgtctacaaaagtacttgatg
atgtttgatccacatgctgctgaaaacagttacttcattgttccaacaaggaaagaacta
caggactcagcagctgtagttgattgggagtttttagaccgcatttatgataaaaggaac
ttaagtcctaagccagttgctgaatgtgaacgcaaagattttaagtttgatgcatgcaag
tatcaagatgcagttgtgatgccttggtatcggaatcaggatcaaccacagtacttttat
gtggccgaaatatgctaccagctgagtcctaagtcctcattcccaagttctgaaaactat
aaatcatttgaggattattactttaaaaaatacagtctaaatatccagaatcgagagcag
ccattgttggatgttgatcatacatcagcaaggttaaatttcttgactcctaggtatgtg
aataggaagggtgttgccttgccaacaagcagtgaagaaaccaaacgagctaagcgtgag
aatttggagcagaaacaaattttagttcctgaattgtgtacagttcacccatttcctgca
tcactctggcgtaaagctgtgtgtctgccttgtatattgtacagaattaatgctcttctt
ttggctgatcaactgcgacgtgttgtagcaaccagcattggtttgggctctctcgagttg
cctcaagacttttactggaagcctttaaactttggctggactctagcagatgtcttaaaa
cgctcacgggaggttaaagcaaaagaagaatctcttaaagacaaagacactgacacagaa
aatagtcaggagtgcccagtgaagtctcctccagatgctgaaattgccaatgaaaagctt
ccacagcccaatagagtaccctctgaagggactgaagataaaaagaagacagacagccct
tggattgatataggaacttggtccaatgagatggctgcacaccctgcccctggccctgac
ccagacatcgactttttcgaccccaatgcagccttgcctggaaatgtgacaatgctacca
aatattccagacatgggaggtggctggggttctggaggtggtcctacaggagctgcacca
ggcacaggctggggctcgcccacctcgcaccaggcggagcctggcactggcggtggtctg
cgcagcggcccgcgccatcctggggctggaggtccttccgcctcaccctggggggtaggt
cctggtagggcaacctccgccaacttccagccggagccctgtgccgcaccggactctgac
tcctacagcgacctgacggacgacgatgacgaggaggaggaggacagcggctcagactgc
ggtgcgggtggcggcgggctgcgcatcgagtacaagccggacaacaccgccgaggcggtg
gaggacgccggcaaggagggcggctcgaggctgtccgtgttccaggcacccatggagcct
ccttgggactggtacagaagccgggaacccgacagacaggaggtctgttgtggctttgag
gagagcattaaaatcaatactcaagtcatccaaacagatgggcgccttattttgagtgat
aatccatatattctggtgagagctcccggtgaccaggctgctattatacaatctgatgta
gatgaaaccaagctgagggcattgaagtacatttcagagttcaacaataataggagtgac
aataaccctatatgtagttctggctcttcagctgttgctgaaagagctcaaaatatgcca
tctttgtctgaagatgaccttggtttcaagtttagttttgatgctcagcctgacctggat
ggacaccctggaccttctcctgccattattctgcaagctctcaccatgtccaatgcgaat
gatggaattaacttggagcggcttgaaaccataggagactcgtttttaaagtatgccatt
acaaccttcttgtattgtacttatgattgtatccatgaagggaaactgagccacctacgg
tcaaagcaggtcagcaacttaaacttatatcggttaggaaggcggaaagtgtttggagag
agtatgattgccacaaaatttgaacctcatgacaactggttgccaccatgttactatgta
ccgagagatttggagaaggccctcatccaagcgggattgcctgcatgccattggaattca
gctgacctaccttcattacggaacttgaccttagaggaaattcaagaaaaagtgaatgaa
aggaaggaaactctaaaacttgccaatatcagtgcagagacagactctgatgatgatgat
gtccccctatctgccgctctgcagcacaagaaacttgttcaattccagcagcagcagcag
ttgaagcttttgcaacagcaaaaagagattgagaagaatctgaaggcaatagaaggggag
gctggtgaagaacaaaaagagttaaacactgataatacaccttcagacacagaccctctt
gtgcttctggactccatgccgtgcttcattccgtacaatctcattactcagcacagcata
ccagacaagagtatagctgactgtgtggaagcacttatcggtgcttatctcatttcatgt
ggtccccgaggggctctgctattcatggcatggctgggaataaaggtgttgcctcaagag
gaattgtccggattggatggcaatgttaagattcagtatggttccctccaacctcctaat
tctcctcttctgagacatgtgacaaatccagaaggccagcttgaaattctattggatggt
tttgagaagtttgagcagaaaattcattacaggttcaaagacagaagctacctcttgcaa
gctcttacacatgcatcatattcaccaaaccaattaacagactgttaccaacgtcttgaa
tttcttggagatgctgttctggactatcttatcactagacacctgtatgaggattggcga
caacattcacctggtgctctcactgatctacgctcagcccttgttaacaacacaatattt
gcatcacttgctgtgaaatttggcttccaccaattctttcgccatctatcccctgggtta
aatgaggttattgataggtttgtcagaatacaggaggaaaatggacatgcaataagtgaa
gagtactacttgattgaggaagaagaatgtgaagaggcagaagatgtagaggtcccaaaa
gccctaggtgatgtctttgagtcagtggctggagcaattttcttggatagtggaatgtcc
ttggatgctgtttggagagtgtactatcgtatgatgcgcccagaaattgaacaatttagt
actaatgttccaaaatctcctattcgggagctacttgaaatggaaccagaaacagctaaa
tttggcaaaccagaaaaattagctgacggacgcagagtgcgtgtcacagtggaggtgttt
agtaaaggtactttcaaaggtattggaagaaactatcggattgccaaatgtactgctgct
aaatgtgctctgaagcaactaaagaaacgagagatgatgcgtagtaagtaa
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integrated database retrieval system
