Frankliniella occidentalis (western flower thrips): 113212546
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Entry
113212546 CDS
T07591
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X2
Organism
foc
Frankliniella occidentalis (western flower thrips)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113212546
NCBI-ProteinID:
XP_026287085
UniProt:
A0A6J1T5Z8
LinkDB
All DBs
Position
Unknown
AA seq
1825 aa
AA seq
DB search
MARGRGLLVALSVIAVVVGAQEYQHRGVERSEDLDSILNIEDDDKKQYLDQNFNASTYDF
GYEIGPSGQFHHEDKGPDGIVYGCYGYVDPFGKLSVTHYLSDGWGYRTVTPGQAVELFLH
PHDPSHHHEEHGDNGDHDDHHNHHDHHGVITPYAQLHFPKGCGVKGNAPQARPPQSGAAN
SEALGTIGQRPQGGSSPVDNNQIGEGPGNYGPIPVSQRPSRPAGATQAPTGSGSYGQTGQ
SGPQVGSSGPDGPFGSNGPTGPNGPTGPNGPNAPNGPSGPNGPNGPFGPSGPNGPSGPIG
SNGPFGPNGPNGPFGSNGPNGPSGPNGPNGPSGPNGPNGPSGPIGPFGPSQATQGSQRPP
AGSNSQGPDAYPGPEGPDDDNQTPVAPDGDYGQRPSPRPPRPGSASQQGYPSTPQRPGPY
NPSGESSQSCGPGTGFPCSSTGLPGQSPFGPAQPMRPSTGYPSQPPAYPSSPAYPSTPAR
PTYQQSCGRPGSPGCEASTPSQSTPSGYPSRPTNPASPFGFSTTPRPSPPDSSNPSESSS
APAYPTRPPNPFSPSAPSGPGGYPTRPSSSPSRPTTSPFGSTQPNGYPSSPPPFASSSSP
SRPSNGYPSGPSSPSQPPRPSNGYPSGPSQPSQPSRPPSGYPNGPSQTSRPQSGYPNGPS
QPSSNYPSGPSQPPQASRPQSGYPSRPSQTSRPSSGYPSAPVSQPPQPSSPTSGYPSGPS
QPSSGYPSGPAPPSRPSSGYPNGPSPPSQPSRPSSSYPSSPSPFESTSSQPSQPSSGYPS
GPSAPAQPSRPPTSYPSAPSSPSQPSVPFNGYPNGPPSPSQPSRPQPARPLGPTPSPFGP
TRPSSVTPAQPSRPSGGYPSGPSSPSPFETNSPEEPSGPSGPSSPYPSGPSSQFPYSPSP
FTPASQTKPSSSRPSYPSGPSNYPSTPSGFPSSTQAPPLPQSTQRPSFPSRPSTEYPSGP
SSSAYPTGPAQPSGYPVQPLVPSRPSVYPTEGPAGANTPPSYPSGPSSPSSSSPFGPSSP
ASSQPPARPSGYPSGTQAPRPGQQPSRPASGYPGSSPSTPSPFLPPSPSAVYPIRPSGAQ
PSSPSCGQTPFGSLCPSEQTRPPSSESTPSRPFPQRPSSPAPYPSSPLPSPGQGCSSSGS
YNCRPTSGTPSAPGRPSFGQPSRPAVPSGYPSAPGNSACGTAANPCVSAPAGNPFTSPPR
PAGYPTQPSTSVPLGPSTSYQPTPSAGYPTRPTFQPSYTNRPGSGYPSETPTRPQPARPT
AGPQYPIQPQEENPGQPSEPSSPGQSPFQPGSSGYPTLPPFPSPSRPASGYPSSPSSTQY
PSAFTKPVRPATGYPSTPSSGYPSGPAQPAYPSSTSQPEEQQPQQPDAGLESPASPPRPF
YPSSTPAYSKPTSTGSSCSDSSGFGPAAGEGCSPSGQPYETSKPVGFTRPPGSTYPDYSQ
SGYPDGRPPAGSASFAEDPRPGRPSSAAPFRPTPAPIQQSYRPTTPSPLPPQQTRPTSTP
PFSGYPSSTTPSSKPVEPSYQQPLSPASGFPSYQTSGSTQAPLQPEIVPTSQFSSPLKPS
PGGEDQSNYPETGTGSNAEYGPEEPSGSAYPAKPFAGQPISQVTYKPSFPLTPSSVGPSL
PDSPDENAITEHPDELLQGSHSPDKKPYPVYVIPFPVNIVPSPSSCPCYLVTPGNQSSNS
SPPQAVSQIPPVPAYSGQGQPYGIIGYIPVVFYPYCPGNETNHEAIQPMFPSAVSVPYPC
NQCQNPSPAPPTESRQQLAYGQRMSYQPRGQARSRRYQQQNQQNSFQQVMNQANIDMTGI
ARAPHRRKVAYGRRIRSKKVNRDSA
NT seq
5478 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgggggagggggctgctggtggcccttagtgtcatcgcagtggtcgtcggcgca
caagaataccagcatcggggtgtggagcggtccgaggacttggacagcattctgaacatc
gaggatgacgacaagaagcagtacctcgatcagaattttaatgccagcacatacgatttt
ggttacgaaatcggtcctagtggccaatttcatcacgaggacaagggtccggacggcatc
gtgtacggatgctacggatacgtggaccctttcggcaagctctccgtgacgcactacctg
tcagacggctggggctaccgcaccgtcacaccaggacaggcagtggagctgttcctccat
cctcacgaccctagtcaccaccacgaggagcacggagacaatggcgaccacgacgatcac
cacaaccatcatgaccaccacggcgttattaccccgtacgctcaacttcatttccctaag
ggatgcggagtgaaaggaaacgcgccccaggctcggcctcctcagagcggcgctgccaac
tcagaagccttgggcacaatcggccagaggccacaaggaggttcgtcaccagttgacaac
aaccaaataggagaggggccagggaattatgggccaattccagtatctcaaagaccatcc
cgcccagctggtgctactcaagctccgacaggatcaggctcatacggacaaactggacag
tcaggaccccaagtcggttcatcgggaccggacggaccctttggatcaaacggacccaca
ggacccaacggacccacaggacccaacggcccgaacgcacccaatggacctagcgggccg
aatggaccaaatgggccatttggtccaagtggtcccaacggaccctctggtccaattgga
tccaacggtccctttgggccaaatggtccgaacggtccctttgggtcaaatggaccaaac
gggccatcagggccaaatggaccgaatgggccatcagggccaaatggaccgaacgggcca
tctggaccaatcggaccgtttgggccaagtcaagcaacacaaggctctcagcgccctccg
gctggatccaactcgcaagggcccgacgcgtaccccgggcctgaaggaccagatgacgat
aatcagacacctgttgccccagacggcgactacggtcagcgaccaagtccgagaccccct
cgcccagggtccgcttcccaacagggctatccatccacgcctcagaggccaggaccttac
aacccaagtggagagtcatcgcagtcgtgtgggccaggcaccggttttccgtgcagttct
acagggttgcccgggcagtcgccttttggccctgctcagcccatgaggccatcaacaggg
tacccgtctcagccaccagcataccccagcagcccagcgtacccttctaccccagctcga
cccacgtaccagcaatcatgcgggcggccaggatctccgggttgcgaagcctcaacacca
agccagtccacaccttctgggtacccgtcaagaccaacaaatcctgcctcgccgtttgga
ttttcaactacgcccaggccatcaccccccgattcaagcaacccttctgaatcttcgtct
gcgccggcataccctactcggccgccaaaccccttctccccatctgcgccatctggccct
ggtgggtatccgaccaggccctcttcgtctccatcacgacctacaacatcgccttttgga
tcaactcagcccaatggttatccgagcagtcctccgccgtttgcatcgtcttcctcgcca
tcgcgtccttcaaatggttatcccagcggtccgtcgtcgccatcacagccaccgcgtcca
tcgaatggttatcccagtgggccgtcgcaaccatcgcagccatcgcgtccaccaagcggg
tacccgaatgggccatcgcagacatcgcgtccacaaagtggatatcccaatggaccatca
cagccatcaagtaattatcccagtgggccgtcacagccaccgcaagcatcgcgtccacaa
agtggttatcccagtcggccctcgcagacctctcgtccatcaagtggataccccagtgcg
ccagtatcgcaacccccacagccatcgagtccaacaagtggttatccaagtgggccgtcg
cagccatcaagtggttatcccagcgggccggccccaccgtcgcgtccgtcaagtggttac
cccaacggaccgtcaccgccatcgcagccatcgcgtccatcaagtagctatcctagtagc
ccttcgccgtttgaatcaacttcctcgcagccatcccagccgtcgagtggctaccctagt
ggaccatcagcacccgcacagccatcgcgtccgcctactagttatccaagcgcgccgtct
tcaccttctcagccatcagtgccatttaatggttatcccaacggtccgccatcgccttcg
caaccatcacgcccacaacctgctaggccattaggcccaacaccgtcaccgtttggacct
acacgtccgtcgagcgtaactccggctcaaccatcacgaccgtctggtggatacccgagc
ggtccatcgtcaccctcgccatttgaaacgaactcaccagaagagccgtccggtccgtcg
gggccttcgtcaccttaccccagcggcccgtcatcgcagttcccgtactcaccctcaccg
tttaccccagcctcacaaactaagccttcctcctcccgtccgtcttacccgagtggaccg
tcaaattatccgtccacgccttctggattcccttcgtctacacaggcccctccgctacct
cagagtacccagaggccttcattcccgtctcgaccatctactgaatatccgagcgggcct
agctccagcgcatatcccactgggccggcgcagccctctggttacccggtacaaccttta
gtgccttcccgcccatctgtttaccccacagagggtcctgcaggagcaaacacgccgcct
tcttatccctcgggcccttcttctccgtcctcgtcttctccattcggtcctagttctcca
gcatcttcccaaccaccagcaaggccatctggttatcccagtggcacgcaggccccgcgg
ccagggcaacaaccttctcgccctgcctcaggctaccccggctcttctccttccacccct
tcaccgttcttaccgccgtcgccttccgcagtgtacccaatcagaccttcaggagcccaa
ccaagcagcccgtcatgtggtcaaacgcctttcggatcgctgtgcccatccgaacaaaca
cggcctcctagcagcgagtcaactccgtcccgacccttcccacaacgcccgtccagccct
gctccgtatccgtcgtcgcccttaccctcgccaggtcagggctgcagctcttcgggtagt
tacaattgcagaccgacctcaggcacgcccagtgcacctggaagaccctcatttggccaa
ccatctcgccctgcagttccttctggctatcccagtgcacctggaaactcggcctgtggc
acagcggctaacccctgtgtatcggcaccagcaggtaatcctttcacgtccccaccgcgc
cctgcaggataccccacacagccatcaacatcagtgcccctaggaccttcaacttcatac
cagccaaccccttctgctggatacccgaccagaccgaccttccagccgtcttacacgaac
agacccggctccggatacccatctgaaacaccaacccgcccacaacccgcccggccaaca
gctggacctcagtatcctatccagcctcaagaagagaatcccggtcagccctctgaaccg
agctcacccggccagtcacctttccagccagggtcgtctggataccctaccttgccgcct
tttccatctccatccaggcctgcaagtggatacccatcgagcccgtcttctacccagtat
ccatcggcgttcactaaaccggtgaggcctgcaactggatatcccagcactccatccagc
gggtacccgtctggaccggcccagccagcgtatccctcatctacgtcccagcccgaggaa
caacaaccacaacagcctgacgccggacttgagtcgcctgcgtcaccaccaaggcctttt
tacccatcctcgacgcctgcctactcaaaaccgactagcacaggttcaagctgcagcgat
tcgtccggtttcgggcctgcggctggagaagggtgcagtccgtctggccagccctacgaa
acgtctaagccggttggtttcacccgtccgcccggctccacgtaccctgactactcgcag
tcgggctaccctgacggacggccaccagcaggatcagcgagtttcgctgaagatccccgt
ccgggccgcccctcgtccgctgctccgttcagaccaacccctgcacccattcaacagtct
taccgaccgaccaccccgtcccctcttccaccgcagcagacgagaccaacttccacacca
ccgttttcgggctacccgtccagcactacgcctagttcgaaaccagtggaacctagttat
cagcagcctttgagccctgctagtggttttccgtcttatcagacaagtggctcgactcag
gcccctttacagcctgaaatagttcccacaagccagttttcgtctcccctaaaaccatct
cccggtggggaagatcaatctaactaccccgagacaggcaccggttctaacgcagagtat
gggccagaggaaccctcagggtctgcttacccggcgaagccatttgctggccaaccaata
agccaagtgacatacaagcctagcttccctctgacaccctcatcggtaggtcctagccta
ccagacagtcccgacgaaaacgccattacagagcacccagatgaactccttcaaggaagt
cactcccctgacaaaaaaccatatcccgtttatgtcattccattccctgtaaatatagtg
ccgagtccatcttcttgcccttgctatttagttacaccaggcaatcagagctccaatagt
tctccacctcaggccgtttcacagatcccacctgttccggcgtacagtggccaaggccaa
ccgtacggtattattggttacatccctgtagttttctatccatactgccctggaaacgag
acgaaccacgaggccattcagcctatgttcccatccgctgtgtcagtaccttatccatgc
aatcagtgccaaaacccttcgccagccccgccgaccgaatcacggcaacagcttgcatac
ggccaaaggatgagttaccagccgagaggacaagctagatcccgccgctaccagcagcaa
aaccaacaaaactcatttcaacaagtaatgaatcaggctaatattgatatgacaggtatt
gcccgcgcgcctcaccggagaaaggtagcttatgggcggagaatccgatcaaagaaggtt
aatagggattcggcgtaa
DBGET
integrated database retrieval system
