Frankliniella occidentalis (western flower thrips): 113215986
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Entry
113215986 CDS
T07591
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113215986
Enzymes [BR:
foc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113215986
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113215986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
MukF_M
Motif
Other DBs
NCBI-GeneID:
113215986
NCBI-ProteinID:
XP_052127327
UniProt:
A0A9C6X1C4
LinkDB
All DBs
Position
Unknown
AA seq
1730 aa
AA seq
DB search
MPPKKEVGFQDPKKVVSDVDNTNTVELDELISSESEDEGVSTRDLNVALQQGKIDEADER
LEKAFEDEVEQLEEVLESPGDTELNLVVKKLQKFTSFDKARFQDISPQIVEGRKFIIDGD
SLLMHALDSKGLSMELGGQTLHVIYIVENFLQTFISRALNFVVVFFKIWDKAWTGFPQLT
MARNAVKLHLLHNQKKFDVISTNSLWSEEFKQYLAQQRPGFLMMSTRLPHFIQSSKVEDE
KTSSKWLQFVMSAQSAHCEFICLDVVDIGSVVSSSACLMATVHVHFNNLGQFEEKVSKDI
KAVENMMPEVSQAQAFKELPEKDVKSSIIILAASSLLKKNPSSDVISVTKIVLLSLAFQE
HLPLKMRCFKNLPDLPPRVAQILHDFQGEMANIISNLPTDADKLSSVDFRFVGDLWQGTF
VKAVFHGIAEAGSLQSGELGNIVASRYEEFVSLVKKLTDVQNLQAYPFEHFCEGTCSGHT
VEKTVSMLPTHFGTKKLLQSSCKLSELFCGDLSSKFARTISACQDWSDDEYLLKSQHWQN
LKPLTDEYERIPDDAAKDKESQYETNKRYAQNSRNAYARYQTIYGMSLEGRTAVKAIVTN
SANKHQNTKKTVDKPKAPTKAKQVSKKDKIIEDNLKRMMDDKQKQLKERLKSFSNNFSSL
MLKGDFSAAIEKCDVELQRASDFKEFVLDLLFQKSKACFGLWSDECHKKPSDRNMLGARQ
LFLVVREILKTVQENNLSLGSKQKIALSGFLHDLGFKELAEMKELPDPGKTSQASYQVQM
NYVEFQLTQLGSELNRETGGKPDPRADGFIPDPWQVELFDIIDKRQSAVVVAPTSSGKTY
ASYYCMEQVIRDSDDGVVVYVCPTKALVNQVYATIYARFKKNLPPGKTLLGTFTRDFRQN
VANCQILTTVPECMELLLLSPGCQSVVKKIKYVIFDEVHCLVGQSGGLSWENSLLLIRCP
FLALSATIHKPEKFCAWLQRMETFKKAQAEKFGLSDRPHGSYKVTLVVHSERHNHLLKNV
MMEDGTIEHVHPYSFLNLASGDEYHGIPKHIVLSPDEAFELFNAMKKVLKSEKINNLDIV
KYFKELCPSGFLSMQSVQKFCVDLRTMLEEESLDDQLKVLDCLKKVDYSGLNTSEEYVYR
NIPWVLDALKDRGMLPALVFTYNRALVEAMPLKLLRYLRDLDDFTEDEETDIESESETEN
DKKANKTHRRFRGKRFKRKLGLMRGPSMLKSTGSLRGEGFTDEKMIDFIEKRLIKTGYKA
QDSFPSLLRRGLGKHFAGMNNRERSAVEMLFRLKILNLLTATETLALGIHMPCKTVVVAG
DSPFLNVLEFNQMSGRAGRRGFDKEGNVIFFGLHQRKMETLMTGNLPQMVGNFPLSASLI
LRLLLLGSDVNLEGKEAETFSNEALAKTYTLLENSLLYETQDFLKERMKYFFYFVVQFLM
CQGLLTKDGIPHTDALMLTHLHYHEPGNFAFYFLLKTGVLENLCKSDKKGVITEESLVNL
VIVLSFLFARLPLSEHLLNRKRMCSVVVLPPLPDTVQEALKNYNKMTLNIFSHYFMCVSD
DIKEKHGDETTLPLSQLDVQSNNVLQEEILKEGKVVSSLSNLHVTSNVCSVFAGLSGYSD
QDLFPLSGELAHIRGDLNVKAVPTLELDFSCNSYALDFYRHGTREALCFDNGLHSGHDFT
VLKDFMLVLKSIQTSLSETYPNSKFFEAVGIISNTFETNFTKAYYAFKGL
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atgccacctaaaaaagaagttgggttccaagatccaaagaaagtggtttcagatgtagat
aatacgaatactgttgagttagatgaattaataagcagtgagagtgaggatgaaggagtc
tcaaccagggacctcaatgtagctttacagcaaggaaaaatagatgaggcagatgaaagg
cttgagaaggcatttgaagatgaagttgaacagcttgaagaggttttggaatccccagga
gatacagaattaaatttggtggtcaagaaactgcaaaaattcacttcatttgataaagct
cggttccaagacatatcacctcagattgttgaaggacgaaaatttatcattgatggggac
agcctgctcatgcatgctctcgactccaaaggtctttcaatggagcttggtggtcaaact
ttacatgtgatttacattgttgaaaactttctccaaacttttataagtagagcattaaac
tttgtagttgtatttttcaagatttgggataaggcttggaccgggtttccacaactaacc
atggctagaaatgctgtaaagttgcaccttttacacaatcagaagaaatttgatgttatt
agcacaaattccttatggtctgaagaattcaagcaatatctagcccaacaaagaccagga
ttcctcatgatgtctactagacttcctcattttattcagtcatcaaaagtagaagatgag
aaaacatcatcaaaatggttgcagtttgtgatgagtgctcaatcagctcattgtgagttt
atatgccttgatgttgttgatattggttctgtcgtctcatcaagtgcatgtcttatggca
acagtccatgtgcattttaacaatcttggtcaatttgaagagaaggtctccaaagatata
aaggcagttgagaacatgatgccagaagtaagccaagcccaggcttttaaagaattgcca
gagaaggatgtcaagagctccataatcattttagcagcatcttcgcttctcaagaaaaac
ccaagcagtgatgttatcagtgtcaccaaaattgtgcttctgtcattagcatttcaagaa
cacttgcctttaaagatgaggtgcttcaagaatttgccagatctgcctcctagagtagct
caaatcctacatgattttcagggtgaaatggcaaatattatttctaacctaccaactgat
gcggataaattatcatctgtcgacttcagattcgtaggagacctttggcaaggtactttt
gtgaaggctgttttccatggcattgcagaggctggaagtctccaaagtggcgaattaggg
aacattgttgctagccgatatgaagagtttgtttcacttgtcaaaaaactgactgatgta
cagaacttacaggcatatccttttgaacatttctgtgaaggaacatgttcaggacacact
gtggagaaaaccgtgtcaatgcttcctacccattttggtacgaaaaagcttttgcaatca
tcatgtaaattatctgaattgttttgtggtgatcttagtagtaaatttgctcgcactatt
agtgcatgtcaagattggagtgatgatgaatatcttcttaaaagccagcactggcagaat
ctaaaaccattgacagatgaatatgaacgaattcctgatgatgcagctaaggacaaggag
tcccagtatgaaacaaataagagatatgctcaaaattccagaaatgcttatgcacgatac
cagaccatatatggcatgagtttagaaggacgtacagcagtaaaggcaattgtaaccaat
tcagccaacaaacatcaaaatacaaagaagacggtcgacaaacctaaagcaccaaccaaa
gccaagcaggtgagcaagaaggataaaattattgaagataacttaaaaagaatgatggat
gacaagcagaagcaactgaaagaaagactaaagagtttttccaataatttttcaagttta
atgttgaaaggtgattttagtgcagcaattgagaaatgtgatgttgaactgcagcgagcc
agtgacttcaaagagtttgttttggatctactatttcaaaagtccaaagcctgttttggc
ttgtggagtgatgaatgccacaagaaaccctctgacagaaatatgttgggagcaaggcag
ttgtttttagttgtgagagaaatattgaagacagttcaagaaaataatctttctcttggt
tctaagcaaaaaattgctctctcaggtttccttcatgacttgggttttaaagaattagca
gagatgaaagaattgcctgatccaggtaaaacttctcaggcttcatatcaagttcaaatg
aactatgttgagtttcaattaacccagttgggttcagaattgaacagagagactggtggg
aagcctgaccctagagccgatggtttcatacctgatccatggcaagtggagctttttgac
ataattgacaagaggcaatctgctgttgttgtggctccaacatcatctggaaagacatat
gccagttattactgtatggagcaagttattcgagatagtgatgatggtgttgttgtgtat
gtttgtccaacaaaggctctggtgaatcaagtatatgctactatttatgctagattcaag
aaaaacttaccacctgggaaaactctgttgggtacatttacccgagatttccgacagaat
gttgcaaactgtcaaattttgacaacggtcccagaatgcatggaactacttttactttct
ccgggttgtcaatctgtggtaaagaagatcaagtatgtgatctttgatgaagttcattgc
ttagttggtcaaagtggtggattatcatgggagaactcacttcttctcattcgttgcccc
ttcctggcactctctgctactattcacaagccagagaaattttgtgcttggctgcagagg
atggagacttttaaaaaagcacaagcagagaagtttggcttatcggacagaccacatggg
tcttacaaggttactcttgttgtgcattcagaaaggcataatcatctcttgaagaatgtg
atgatggaagatggcacaatcgaacatgtacatccttactcattcttaaacctagcaagt
ggtgatgagtaccatggcataccgaagcacattgtgctttcaccagatgaagcatttgaa
ttatttaatgcaatgaagaaagttctcaagtcggaaaaaatcaataaccttgacatagta
aaatattttaaagaattatgtccatcaggtttcctttcaatgcaatcagttcaaaagttc
tgtgttgacttacgaaccatgcttgaagaggaatctcttgatgaccaactgaaagtgctt
gattgtctaaagaaggtagattatagtggccttaatacaagtgaagaatatgtttacaga
aatatcccatgggtcttagatgctttgaaagatagaggtatgttgcctgcattagttttt
acatacaatcgtgcccttgtggaggctatgcctttgaaactacttcggtaccttcgagac
ctggatgacttcactgaagatgaggaaactgacattgaaagtgaatccgagactgagaat
gataaaaaagccaataagacccacagaaggttccgtggaaaacgatttaaacggaagttg
ggtctcatgaggggtccatctatgctcaagagcactggttctctgagaggagaaggcttt
actgatgagaaaatgattgactttattgaaaaacgtctaatcaaaactggttataaagca
caagattcgttcccaagtttgctcaggaggggtttggggaaacattttgctgggatgaat
aaccgagaaagatcagcagttgagatgctattccgattgaagatcctaaatctccttact
gccactgaaaccttggccctgggtattcatatgccatgcaaaactgtagtggtagctggt
gacagcccctttttgaatgtccttgagtttaatcagatgtctggtcgagctggcagacga
ggttttgacaaggagggaaatgtgatattttttggactccatcaacgcaagatggaaact
ctcatgacagggaatttaccacagatggtgggaaacttcccattgagtgcatcactgatt
cttcgcttacttttgttaggcagtgatgtaaacttggaggggaaagaagctgagacattc
tccaacgaagctttggcaaagacctacactctgcttgaaaatagccttttgtatgagact
caagatttcttgaaagagaggatgaagtatttcttctattttgtagtccaatttctgatg
tgtcagggtctcctgactaaagatggaatccctcatacagatgccctcatgctcactcat
cttcactaccatgaacctggaaactttgctttctacttcctcctcaaaactggagttctt
gagaatctatgtaaatctgataaaaagggagttattactgaagaatctttagtaaatttg
gttatagtcctgagcttcctatttgcccgccttcctttgagtgagcatttactgaacaga
aaaagaatgtgttctgtggtagtgcttcctccactaccagatactgtgcaagaggctttg
aagaactataacaaaatgacactgaacatctttagccattacttcatgtgtgtatcggat
gacataaaagagaagcatggagatgagactacattgcctctttctcagctggatgttcag
tccaataatgtgctccaagaagaaatactaaaagaggggaaagttgtgtcatctctgagt
aacctgcatgtgactagcaatgtctgctcagtctttgctggtttatctgggtattctgat
caagatttgttcccattgtctggtgaactggctcatattagaggagatttgaacgtcaag
gcagtacctactctggaactggacttcagctgcaattcatatgcattggatttctacagg
catggcacacgagaagctttgtgctttgacaatggtttacattcagggcacgatttcact
gtcttaaaagatttcatgctggttcttaagtctattcagacatcattatcagagacatac
cctaattcaaaattctttgaagctgttggaattatttccaacacctttgaaacaaatttc
acaaaggcatactatgcttttaaaggtttgtaa
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integrated database retrieval system
