Frankliniella occidentalis (western flower thrips): 113217533
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Entry
113217533 CDS
T07591
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113217533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
foc03400
]
113217533
Enzymes [BR:
foc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113217533
DNA repair and recombination proteins [BR:
foc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
113217533
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_IV
LIG3_BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
113217533
NCBI-ProteinID:
XP_052126141
UniProt:
A0A9C6U6D7
LinkDB
All DBs
Position
Unknown
AA seq
836 aa
AA seq
DB search
MNKEGRLLLPKLNGERGRYGMKEHTLANTYRKILCLPKNGVEANKLLKFRSPAAGSSAGD
FADVAYWVLKSRCRNGGKLTVGQVDSHLTNIATLNANNNRRGIDVELTDVLFKMSAHEQK
WFIRLLLENLRLGLGQNDIMKAIHPDAKDLYDVCSSLKKVCEKLHDPSKRLHEIEISLFQ
PCRPMLSERLDILKVDTIINKAPFYYVERKHDGERFQIHKDNGKYCYFSKNGKPEYTDNY
GDSMNSGLLTPFLGKQLHADVKTCILDGEMMAWNTKMNFFQSKGPNFDVKRLREGDLHRP
CFCVFDVLMLNGEILTNKPLEDRINVLNKLFSPLEGVIMHTPQKRVTTSTEIIEALNNAI
DNQEEGLIVKHPSSIYKPATRSGGWYKIKPEYTVGLTDELDLIILGGYFGEGRRKANISH
FLVGVAVSPANEGTNPVDFYSVGRVGSGYSREELADLLQKLTPHWRTVKSGFLPNGLHWT
KEKPDVWIEPSKSQILQVKATEIVKSDSYKTGYTLRFPRVEKVRYDKNWSDCCTTSDFEK
LRLSNSGKLASRHVMAADLSQAPPKKRPRTKPVGAVGRDYRAADLTDSDQRGTLFTGKEI
CVFSGNAQVSKQVMEKRIHEQGGTCVQQRGPDTFCIVAGKKDFRLKNLIQNGDVDVVKVD
WFLRVLDEERLLEWTPHDLLSMSKKTSEDILTKYDRFNDSYQNPTSMQELKISLEKVAKE
GCAVNLLPSEMADLDIELFSDLNKFAVFRCCVALFNSSTLNEFTCELSQAMFQFYGGRIA
QEMNYDVTHIVLDNNDTENLANFQKMNHSRSRKFHIVSYQWIEDCCDTRERIREFI
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggagggacgcttactcctccccaaactgaatggtgaaagaggacgctatggt
atgaaggagcatactcttgcaaatacctacagaaagattctttgtttaccaaaaaatgga
gtagaagcaaataagcttctcaaattcaggtcgcctgctgctggtagttcagctggagat
tttgctgatgttgcatattgggtgttgaaaagccgttgtcgaaatggaggcaaattgacc
gttgggcaggttgactctcacctcacaaatattgctactttaaacgcaaacaacaatcga
aggggcattgatgtggagctaacagatgtacttttcaaaatgtctgctcatgagcaaaag
tggttcatacgcctgcttctagaaaacctgagacttggtcttggtcagaatgatattatg
aaagctattcatccagatgcaaaagatttgtatgatgtctgcagtagtttgaaaaaggtg
tgtgaaaaattacatgatcccagcaaacgtttacatgaaattgaaatttcactttttcaa
ccatgccggcccatgctatctgagaggttggatattttaaaagttgacactatcatcaat
aaagcaccattttattatgtggagagaaaacatgatggagaacgctttcaaatccacaaa
gataatggaaaatattgctacttttcaaagaatggaaaaccagagtatactgacaattac
ggagattcaatgaattcaggattacttacccccttccttggcaaacaattgcatgcagat
gttaaaacatgtattttagatggtgagatgatggcatggaatacaaaaatgaatttcttc
caatctaaagggccaaattttgatgtcaaacgattgcgagagggtgaccttcaccgccca
tgcttctgtgtgtttgatgttctgatgctcaatggagaaattctaacaaataaaccccta
gaagatcgcattaatgtgctcaacaaattattttctcccttggagggtgtgattatgcat
acacctcagaagcgtgtgaccactagtacagagatcattgaagctcttaacaatgcaatt
gacaaccaagaagaaggattgatagtgaagcatcccagctcaatctacaagccggctaca
agatctggagggtggtacaaaattaaaccagagtatactgttggattgacagatgagttg
gatttaattatactgggagggtactttggagaaggccgtaggaaggctaatatcagtcat
ttcttagttggtgttgctgtttctccagcaaacgagggtaccaaccctgttgatttttat
tctgttggtcgtgtgggatctggatattccagagaagaacttgctgatttactccagaaa
ctaactccccactggagaactgttaaaagtggttttttgccaaatggtctccattggaca
aaagagaaaccagatgtatggattgaaccttccaaatcccaaattcttcaggtgaaagca
acagagattgtaaaaagtgattcatacaaaactggatataccttgcgctttcctcgggtt
gaaaaagtccgttatgataaaaactggtcagactgttgtacaacttctgattttgaaaaa
ttaagattatcaaactcagggaaattagcctcccgacatgtcatggcagcagacctttcc
caggcccctcccaaaaaacggcctcgtacaaaaccagttggtgctgttggaagagactat
agagctgctgatttaacagactctgatcaaagaggtactctctttactggtaaagaaata
tgtgtcttcagtggtaatgcccaagtatcaaaacaggtcatggaaaaacgcattcatgaa
caaggagggacttgtgtacaacagagaggccccgataccttttgtattgtagcaggaaag
aaagactttcgtcttaagaatctaatacaaaatggtgatgtagatgttgtgaaagttgat
tggtttctacgagtccttgatgaagagaggcttttagagtggactccacatgacttgcta
tcaatgtctaaaaaaacatctgaggatatattaactaaatacgataggtttaatgacagc
taccaaaatccaacatctatgcaagaacttaaaatttctcttgagaaagttgcaaaggag
ggctgtgctgtgaacttacttccgagtgaaatggctgacctagatattgagttattctca
gacttgaataaatttgctgtcttccgttgctgtgttgcactctttaattcttcaactctg
aatgaatttacgtgtgaactgagccaagcaatgtttcagttctatgggggtcgcatagct
caagaaatgaattatgatgtgacccacattgtattggataataatgacactgaaaatttg
gcgaatttccaaaagatgaatcactctaggtcacggaaatttcacattgtatcttatcaa
tggatagaggattgctgtgataccagagagagaataagagagttcatctag
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