Formosa sp. Hel3_A1_48: FORMA_04690
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Entry
FORMA_04690 CDS
T04482
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
foh
Formosa sp. Hel3_A1_48
Pathway
foh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
foh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FORMA_04690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
foh03400
]
FORMA_04690
Enzymes [BR:
foh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FORMA_04690
DNA repair and recombination proteins [BR:
foh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FORMA_04690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
AAA_25
UB2H
Motif
Other DBs
NCBI-ProteinID:
AOR25654
UniProt:
A0A1D7XQR0
LinkDB
All DBs
Position
complement(505917..509261)
Genome browser
AA seq
1114 aa
AA seq
DB search
MSKQQLSQKFAQSLVLQKLSERMSVDQQKTQLKGIVGSALSFNLAASFQQHQKPFLVVFE
SKEKAAFHLNDLELILPADDVLFYPGSYRRPYEIEETDNANVLLRAEVLNRINSRKKPVL
LVTYHEALFEKVLSKKELNRNTFKIKSGDELSIEFINTILFEYHFKRVDFVTEPGEFSVR
GGIVDVFSFAHDTPYRIEFFGDDVDSIRTFDIASQLSLNTHTSLQIIPNIEHKHQDENRI
GFLDYISKDTILFTSALPELLVVMDQLFDKATSAFEKKDSSVAFSHPSDLFCSSVDFEAK
LSDFSVVEFGSDVLFSVSPDSLIHFNCSPQPSFNKQFNMLIQDLNQQHNEGYNTIICCAN
SQQAQRFHDIFEDQESVVHYNTIVLSLYQGFIDHDNKIVCYTDHQIFERYHKFQLKNGFS
KKQAITLRDLNSLEVGDYVTHIDHGIGKFGGLKKIDVNGKLQEAIKLYYGERDVLYLSIH
SLHKITKFNGKDGKPPKIYKLGSKAWKVLKQKTKSRVKDIAFNLIQLYAKRKLQKGFQYR
SDSAMQLELESSFVYEDTPDQITATADIKRDMESERPMDRLVCGDVGFGKTEVAIRAAFK
AVDNGKQVAVLVPTTILAFQHAKTFKKRFKEFPVTVDYLNRFKTTKQKRETLTQLADGTL
DIVIGTHQLVNKAVQFKDLGLLIVDEEQKFGVAVKEKLKTLKENVDVLTLTATPIPRTLQ
FSLMAARDLSVITTPPPNRFPIESQVIRLNEAIIRDAISYEIQRAGQVFFIHNRIENIKE
VAGMLQRLVPDAKIAVGHGQLDGKKLEQLMLDFMDGAFDVLVSTTIVESGLDVPNANTIF
INNANNFGLSDLHQMRGRVGRSNKKAFCYFITPDYHAMTNDARKRISALEQYTALGSGFN
IAMKDLEIRGAGDLLGGEQSGFINDIGFETYQKILNEAIDELKENEFEHLFKTDQLTKSY
VKELTIDTDFSLLFPDDYVNNVTERLRLYTTLNNLKTDKQLTAFEREVIDRFGPLPTAVI
DLFDSVKMKWIGMQFGLEKILMKQHKMVGYFVPDQSSGFFDSVQFSKILNYVQNNSKSCT
LKEKQTRGGLRLLLTFSNVKSVQQGLTYLRSIAS
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaacaacagctttctcaaaaatttgcacagtctttggtccttcaaaaactgagc
gagcgtatgtctgttgatcaacaaaaaactcagcttaaaggcattgttggctctgcgcta
tcatttaatttggctgcttcttttcaacagcatcaaaagccattcttagtggtttttgag
tctaaagaaaaagcggcatttcacctaaatgatcttgagttgattttgcccgcagatgat
gtactcttttatcctggaagttatcgtaggccctacgaaattgaagagacagacaatgca
aatgttttgcttcgtgctgaggtcctcaatagaataaacagcagaaaaaaaccggtttta
ctggtaacctaccacgaggctctttttgaaaaagtactgtccaaaaaagaattgaataga
aatacttttaaaattaaatcaggtgatgagttgagtattgaattcattaatactattttg
tttgagtaccactttaagcgggttgattttgtaactgaacccggggaattttctgtgcgc
ggtggaattgttgacgtgttttcatttgcacacgataccccctaccgaattgagtttttt
ggcgatgatgttgatagtatacgaacatttgatattgcatcacaactttcattaaatacg
catacatcacttcaaattattcccaatatagagcacaagcatcaagacgaaaatcggatt
ggctttttggattatatttcaaaggataccatattgtttacttcagctttgcccgaactt
ctagtcgtaatggaccaactgtttgataaagcgacttcagcttttgaaaagaaagattct
agtgtagcgtttagtcacccttctgatttattttgttcctcagttgattttgaagctaag
ttgtccgatttttctgttgtcgagtttggttccgacgttcttttttcggtttctccggat
tcattaatacatttcaattgtagccctcagccttcgtttaataaacagttcaatatgttg
attcaagatttgaatcagcagcataacgaaggatacaacactataatatgttgtgcaaat
tcccagcaagctcagcgttttcatgacatatttgaagaccaagaatctgttgttcattac
aacactatagttctttcgttgtatcaaggctttatcgatcatgataacaaaattgtgtgt
tacaccgatcatcaaatctttgagcgctatcataaatttcaattaaaaaacggattttcc
aaaaaacaagccatcactttacgtgatttaaacagcctggaggtgggcgattatgttacc
cacattgatcatggaattgggaaatttggtggactcaaaaaaattgatgttaatggaaag
cttcaggaagcaataaagttgtattatggcgaacgagatgtattgtatttgagtatccat
tcgttgcacaaaatcaccaaatttaatggtaaagatggaaagccccccaagatttataaa
cttggcagtaaggcctggaaagtactcaaacaaaaaacaaaatcacgagttaaagacatt
gcgttcaacctgattcagctgtatgctaagcgcaaactccaaaaagggttccaataccgt
tcagattctgctatgcagctggagctggagtcgtcctttgtatatgaagatacccctgat
caaataacggctacggccgacatcaaaagagacatggaaagcgaaaggccaatggatcgc
ttggtttgtggggatgttggttttggtaagactgaagtggctattcgtgctgcatttaaa
gctgtggataacggaaagcaagtggcagttttggtcccaacgacaattttagcatttcag
catgccaaaacttttaaaaaacgttttaaagaatttcctgttacagtagattatttaaat
cgattcaagactaccaaacaaaaacgtgaaacattgacacaattggctgatggcacttta
gatattgtgataggaacccatcaattggtaaataaagcagtacaatttaaagatttagga
cttttaattgtggatgaagaacaaaaatttggtgttgcagtaaaagaaaaattaaaaaca
ttgaaggagaatgttgatgtccttaccttgacagcgacccccattcccagaacccttcaa
tttagcttgatggctgcacgcgatttatcagtcatcacaactccacccccaaatcgtttt
ccaattgagagtcaggttattcgcttaaatgaggccataattcgagatgctattagttat
gaaattcaacgtgctggacaagtattttttattcataacagaatagaaaatattaaagag
gtagcggggatgcttcaacgactagttcctgatgcaaaaatcgctgttggacatgggcaa
ctagacggtaaaaaactagaacaactcatgcttgattttatggatggtgcttttgatgtt
ttggtcagtacgaccatagtagaaagtggactagatgttcctaatgccaataccattttc
atcaataatgctaataattttggccttagtgatttgcaccaaatgcgtggtcgtgtggga
cgtagtaataaaaaagcattttgttatttcatcactccggattaccatgccatgactaac
gatgcgcgtaagcgtattagtgctttagaacaatatacggccttagggagcggatttaat
attgcgatgaaagatcttgaaattcgtggagcaggagacttattgggtggagaacaaagt
ggctttattaacgacattggctttgagacgtatcagaaaattttaaatgaggccattgat
gagctaaaggaaaacgaatttgagcacctattcaagaccgatcaacttaccaaatcgtat
gtcaaagaattgactatagacacagatttctcgctattgtttccagatgattatgtgaat
aatgttactgaacgtttgaggttatatacaactctaaataatttaaaaaccgataagcaa
ttgactgcatttgagcgggaagttatagaccgatttgggcctttaccaacagcagtaatt
gatctttttgacagcgtaaaaatgaaatggattggaatgcaatttgggttggaaaagatt
ttgatgaaacaacacaaaatggtaggctactttgttcctgatcaaagcagtggatttttt
gattctgtacaattttcgaaaattctgaactatgttcaaaataattccaaatcctgcact
ttgaaagagaaacaaactcgtggtggtttacgccttttgcttacatttagcaatgtcaag
tccgttcaacaagggttgacttatttgcgcagtatcgcgagttga
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