KEGG   Flavobacterium panici: NLJ00_16410
Entry
NLJ00_16410       CDS       T08520                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fpb  Flavobacterium panici
Pathway
fpb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fpb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NLJ00_16410 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fpb03400]
    NLJ00_16410 (ligD)
Enzymes [BR:fpb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NLJ00_16410 (ligD)
DNA repair and recombination proteins [BR:fpb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NLJ00_16410 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S mRNA_cap_enzyme DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: UUF12841
LinkDB
Position
complement(3904338..3906887)
AA seq 849 aa
MSLSKYNEKRDFKQTREPKGKIGKSASELIFVVQKHAASHLHYDFRLEMDGVLKSWAVPK
GPSLDPEIKRLAMMVEDHPYSYKDFEGTIPEGNYGAGNVIVWDNGTYTSDEKTASDEKQL
LADLKKGRLSFILKGKKLKGEFSLVKLHGKQENAWLLIKKQDKYATDTDILEKNKSVISK
RSLEQLEKKSEKVKAKPEEKEEKQTIKKKFKAKPAEVSFVKPMLATTVEKPFDDEEWVFE
NKYDGYRTVAVINPDEVNLFSRNQISFNVSFKPIADELKKIDHTVILDGEIVVENESGKA
DFQLLQNYLKTGIGNLKYYVFDLLNLDGNSVTDLSLLDRKELLKILFNKYDFTNVFYSEH
TIGDGIKQFEKARKNNSEGIIAKKADSSYNIATRSNNWLKIKISNEEEAIIIGITEPKNS
RKYFGAILLGQYNDGELKYIGKCGTGFSEEVLKELYTKLKPLFLDKSPLSEKVPIRDKIQ
WVKPKVVCQVKYSEWTQDNNLRHPVYLGLRIDKKANEVVFSGKSKTNLKQNKMEDLKEHK
TENDYDLKVGKATLHLTNQNKIYFPADGITKGEIIQYYNEVSSLILPYLKDRPESMNRFP
NGIDAPSFYQKDIDLEKTPKWLKTKKIFSESNEENIDYLICNDKETLLYMANLGCIEINP
WNSTIKNIHNPDWLVMDLDPAKEDDFHIVVETAQVVKQVMDELETECLCKTSGATGLHIY
IPLGAQYDYDSIKILGELIAKEVQTRLPDITTIERSIKKRDNKLYIDYLQNRRGQTLAAP
YSVRPKPGATVSTPLEWSEVTTKLHPSQFTIKNVLQRFEKKGDLWEPVLSKGANIKKIIK
KLEEKQERV
NT seq 2550 nt   +upstreamnt  +downstreamnt
atgtcactgtctaaatacaacgaaaaaagagattttaaacaaacccgcgaaccaaagggt
aaaatcggaaaatcagcaagtgaattgatttttgtcgttcaaaaacatgctgcatcacat
ttgcattatgattttagattagaaatggacggagttcttaaaagctgggctgttccaaaa
ggtccatcacttgatccggaaataaaacgcctcgccatgatggtcgaagatcatccttac
agttataaagattttgaaggtactattcccgaaggaaattatggtgccggaaatgttatt
gtctgggataacggaacgtatacttctgacgaaaaaaccgcctcagacgaaaaacaatta
ttagccgatttgaaaaaaggacgtttaagttttatcttaaaaggaaaaaaacttaaaggg
gaattttcattggtaaaacttcacggaaaacaggaaaacgcctggctgttgatcaagaaa
caagataaatatgctacagatactgatattttagaaaaaaataaatcggttatttctaaa
agaagtttagaacaactggagaaaaaatctgaaaaagtaaaggcaaaaccagaagaaaaa
gaagaaaagcaaacgataaaaaaaaagtttaaagcaaaacctgccgaagtttcttttgta
aaaccaatgcttgccactacagtcgaaaaaccttttgatgatgaagaatgggtttttgaa
aataaatatgacggctatcgtactgttgccgttattaatccggatgaagtaaatttattc
agcagaaatcaaatttcgttcaatgtcagttttaaacccattgcagatgaattgaaaaaa
atagatcacaccgtaattctggatggcgaaatcgtggttgaaaatgaatccggaaaagct
gattttcaacttcttcaaaattatcttaaaactggaatcggaaacctaaaatattatgtt
tttgatctgcttaatttagatggaaattcggtaacagacctttctctgcttgacagaaaa
gagcttttgaaaattttatttaataaatatgattttacaaatgttttttattcggaacat
actattggggatggaattaaacaatttgaaaaagcccgaaaaaataacagcgaaggtatt
attgccaaaaaagctgacagtagctataatatagccaccagaagtaataactggcttaaa
attaaaatttctaatgaagaagaagccatcatcattggaataacagaacctaaaaattcc
cgaaaatattttggtgccattttactgggccaatataatgacggagaattaaaatatatt
ggaaaatgcggaacgggtttttcagaagaagttctaaaggagctttatacgaagcttaaa
ccgttatttctggataaatccccgctaagtgaaaaagttccaataagagataaaattcaa
tgggttaaacccaaagttgtctgtcaggttaaatattcagaatggacacaggataataac
ctgagacatcctgtttatctgggattaagaattgataaaaaagccaatgaagttgttttc
agtggcaaaagcaaaactaacctcaagcaaaataaaatggaagatttaaaagaacacaaa
accgaaaatgattacgatttaaaagttggaaaagccactttacatttaacaaatcaaaac
aaaatatattttcctgctgacggtattacaaaaggcgaaattattcaatattataatgaa
gtttcatcgcttattctgccttatttaaaagatcgtccggaatctatgaaccgctttcct
aacggaattgatgcgccaagtttttatcaaaaagatattgatttggagaaaactccaaaa
tggctgaaaaccaaaaaaatattctcagaatctaacgaagaaaacatagattatcttatt
tgtaatgataaagaaacattgctttatatggcaaatttgggctgtatagaaataaatccg
tggaattcgaccataaaaaacattcacaatcccgactggcttgtaatggatcttgatccg
gcaaaagaagacgattttcatattgttgttgaaactgcacaagttgtaaaacaagttatg
gatgaattagaaacggaatgtttgtgcaaaacttcgggagcgacaggacttcatatttac
attccgcttggtgcgcagtatgattatgattcgataaaaattttaggagaattaatcgcc
aaggaagttcagacaaggcttccggatattacaacaattgagcgaagcatcaaaaaacga
gataataaactttatatagattatctgcaaaaccgccgcggacaaactttggccgcgcct
tattctgttcgtcctaaacctggtgcaacagtttcaacacctttagaatggagtgaagtt
actacaaaattacatccgtcgcagtttacgattaaaaatgtattacagcgatttgagaaa
aaaggggatttatgggaacctgttttatcaaaaggtgccaatatcaaaaagataatcaag
aaattagaagagaaacaagaaagagtctaa

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