Flavobacterium pectinovorum: Q1W71_18230
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Entry
Q1W71_18230 CDS
T09245
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpec
Flavobacterium pectinovorum
Pathway
fpec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q1W71_18230 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpec03400
]
Q1W71_18230 (mfd)
Enzymes [BR:
fpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q1W71_18230 (mfd)
DNA repair and recombination proteins [BR:
fpec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q1W71_18230 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WKL46888
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All DBs
Position
4375479..4378844
Genome browser
AA seq
1121 aa
AA seq
DB search
MSKNALYTTYDNLPKIQQIATQLLEQNQVKMHLSGLLGSAVSFIIRGVFKKTELPFLVVL
DNKEEAAYYLNDLEQMIGEQDVLFYPASFRRPYQVDETDNANVLLRAEVLNRINSRKKPA
IIVTYPEALFEKVVTRQQLDKNTLKVALNDKISIDFINEVLFEYEFKRVDFITEPGEFSV
RGGIVDVFSFSNDHPYRIEFFGNEVDSIRSFDVETQLSVETHKKITIIPNVENKIFQENR
ESFLDYIAEKTVIFIQNTDGLFSQLDKQFARAEEAFEKLSGEIKHATPEQLFLNQSSFIK
RALDFSIVELASNPIFKTTKKFEFHFQPQPSFNKQFDLLLNNLSENHFNGYKNYLFCSNE
TQAKRFHDIFESLDEANSENIRKQYNTIVLPLYQGFIDEENQITAYTDHQIFERYHKFNI
KNGYSKKQNITLKELTALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIV
YVSIHSLHKISKYNGKDGTPPKIYKLGSNAWKILKQKTKARVKHIAFNLIQLYAKRRLEK
GFQFAPDSYLQNELESSFIYEDTPDQTKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAI
RAAFKAVDNSKQVAVLVPTTILAYQHYRTFTERLKDMPVSVGYLNRFRTAKQKTQTLKDL
AEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEEIIRDAISYEIQRNGQVFFINNRI
ENIKEVAGMIQRLVPNARVGIGHGQMDGAKLEELMLAFMNGDFDVLVATTIIESGLDVPN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSEL
GSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEEN
NIDTKEYVKDIQIDADFELLFPDEYINNVSERLVLYNELGAIKDEAGLQEYERKLIDRFG
PLPKQATALLNSIRIKWIATKVGIEKLVLKQGKMIGYFVSDQQSDYYQSSKFRNVLQFIQ
KHSSLCKMKEKQTVNGLRLLLTFENVKSIKRALELMELFEE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaacgccttatatactacgtatgacaatttgcctaaaatacagcaaattgcc
acacaattactggaacagaatcaggtaaaaatgcatcttagcggattgttaggatcggct
gtttcgtttataattcgcggagttttcaaaaaaaccgaattgccttttttagttgtttta
gacaataaagaagaagcggcttattatttaaatgatttagaacaaatgattggcgagcag
gatgttttgttttatcccgcttcatttcgtcgtccgtatcaggttgacgaaacagataat
gccaatgttttgcttcgtgctgaggttttaaacagaataaattccagaaaaaaaccagcc
ataattgttacgtatcccgaagcactttttgagaaagtagttacgcgtcagcaattggat
aaaaacaccttgaaagtggctttaaacgataaaatttcaattgattttattaatgaagtt
ttgtttgaatacgagtttaaaagagttgattttattacagaaccaggagaattttcggtt
cgtggaggaattgtagacgtgttttctttttcaaatgatcatccgtatcgaattgagttt
tttggaaatgaagtagacagcattagaagttttgatgttgaaacgcaattgtcggtcgaa
acacataaaaaaattacgattatcccgaatgttgaaaacaagatatttcaggaaaaccgt
gaaagctttttagattatattgccgagaaaacagttattttcattcaaaatacagacgga
ctttttagtcagttagacaaacaatttgcaagggcagaagaagcttttgaaaaactttca
ggagaaataaaacacgcaactcccgaacaattatttttaaatcagagttcgtttattaaa
cgcgctttggatttttcaattgtagaattggcttcaaaccccatttttaaaacgacaaag
aaattcgaatttcattttcagcctcagccatctttcaataaacaatttgatttattgctg
aataatttgagcgaaaatcattttaacggatataaaaattatttgttctgttcgaatgaa
acgcaggcaaaacgttttcatgatatttttgaatcgcttgatgaagctaattctgaaaac
atcagaaaacagtataatactattgtactacctctttaccagggttttattgacgaagaa
aatcaaataacggcttatacagatcaccagatttttgaacgatatcataaattcaacatt
aaaaacggctattctaaaaagcaaaatattacgctgaaggaattaaccgcactttcggtt
ggcgattatgtaacgcacattgatcacggaattggaaagtttggcggactgcagaaaatt
caggtggaaggcaaaacgcaggaagccataaaattggtttatgctgataatgatattgtg
tatgtgagcattcactcgcttcataaaatctccaaatacaacggaaaagacggaacgcca
ccaaaaatttataaactaggatcgaacgcctggaaaattttaaaacaaaaaaccaaagcg
cgcgtcaagcacattgcattcaacttgattcagttatatgcaaaacgtcgattagaaaaa
ggttttcagtttgcgccggacagttatctgcaaaacgaattagaaagttcgtttatttat
gaagatacgccggatcaaaccaaatctacgcaggaagtaaaagctgatatggaaagcgat
cgcccaatggatcgtttggtttgtggtgatgttggtttcggaaaaacagaggttgcgatt
cgtgctgcttttaaagcggttgataacagtaaacaagttgccgttttggttccgaccacg
attctggcgtaccaacattacagaacttttaccgaaagactaaaagatatgccagtttct
gttggttacttaaaccgatttagaactgcaaaacaaaaaacgcaaactttaaaagattta
gccgaaggaaaactggatattgttatcggaacgcatcaattggttaacaaaaatgtagtt
tttaaagacttaggtttattaattgtcgatgaggaacaaaagtttggtgtaaacgtaaaa
gacaaattaaaaacgattgcagcgaatgttgacacgctgacattaacagcaacaccaatt
ccgcgaacgcttcagttttcgttaatggctgcgcgcgatttgtcagtaattacaacgcct
ccgccaaatcgatatccgatagaaacgaatgttgttggttttaatgaagagattattcgt
gacgcgatttcgtatgaaattcaacgaaacggacaagttttctttatcaataaccgcatc
gaaaatataaaagaagttgccggaatgattcagcgtttggtaccaaatgccagagttgga
attggtcacggacaaatggatggagccaaactagaggaattaatgttggctttcatgaac
ggagattttgatgttttggtagcaacaacaattatcgaaagtggtttggatgtaccaaac
gccaacacgatttttatcaataatgccaataattttggactttcagatttgcatcaaatg
cgtggtcgagtaggacgaagcaacaaaaaagcattctgctattttatctgtccgccatat
tcttctatgaccgaagatgcgagaaaacgtattcaggctttggaacaatttagtgaattg
ggaagcggtttcaacattgccatgaaagatcttgaaattcgtggtgcgggagatttatta
ggtggcgaacaaagtggtttcatcaatgaaattggctttgatacgtaccaaaaaatcatg
aacgaagctatcgaagaattaaaagaaaacgaattcaaagatttatatccggaagaaaat
aatatcgacaccaaagaatacgtaaaagacattcaaatcgatgccgattttgagctttta
tttccagatgaatacattaataatgtgtcagaacgtttggttttatataacgaattgggt
gccataaaagatgaagccggattacaggaatatgaaagaaaattaattgatcgttttggc
ccattgccaaaacaagcaacagcattactaaatagcatccgtataaaatggattgctacg
aaagtgggaattgaaaaattagtcttgaaacaaggcaaaatgattggttattttgtttca
gatcagcaatcagattattatcaatcgtctaagtttagaaacgttttgcaatttattcaa
aagcatagttctctctgcaaaatgaaagaaaaacaaaccgtaaacggactacgtttgctc
ttaacttttgagaatgtaaaatcaataaaacgagctctagaattgatggaattgtttgag
gaataa
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