Fusobacterium periodonticum: C4N17_10750
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Entry
C4N17_10750 CDS
T06291
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpei
Fusobacterium periodonticum
Pathway
fpei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4N17_10750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpei03400
]
C4N17_10750
Enzymes [BR:
fpei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4N17_10750
DNA repair and recombination proteins [BR:
fpei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C4N17_10750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
CLZ
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVQ26067
LinkDB
All DBs
Position
complement(2131646..2134585)
Genome browser
AA seq
979 aa
AA seq
DB search
MEKKFRGEIPFWLKNKKNSIVYVCSSNRNIDDYFFVLKDFYKGRILRIKKENENGELKKY
NYDLLELLKSDEKFIILISLEYFLEDYYSKANSIFIEKGKEVDIKALEEKLIEAEFEKTY
MLTQRKEYSIRGDILDIFNINQENPVRIEFFGNEVDRITYFDLHSQLSIEKLDSIELYID
NNKDKKDFFSLMYTNKNKVEYYYENNDILQAKVKRLMGENSDRENDIINKITELSKIGKQ
IEIQKFTEEELKQFEVIDRIKKLSENTNIVIYSEEATRYKEIFKGYDIKFEKYPLFEGYR
TEDKLILTDREIKGIRVKRERVEKKALRYKTVDEIAEQDYVIHENFGVGIFLGLENIDGQ
DYLKIKYADEDKLYVPLDGINKIEKYINISDVIPEIYKLGRKGFKRKKARLSEDIEIFAK
EIIKIQAKRNLANGFKFSKDTVMQEEFEEAFPFTETPGQLKAIEDVKRDMESGKVMDRLV
CGDVGYGKTEVAIRAAFKAIMDEKQVVLLVPTTVLAEQHYERFSERFKNYPINIEILSRV
QTKKEQEESIKKIENGSADLIIGTHRLLSDDIKYNDIGLLIIDEEQKFGVKAKEKLKKLK
GDIDILTLTATPIPRTLNLSLLGIRDLSIIDTSPEGRQKIQTEYIDNNKDLIRDIIITEV
SREGQVFYIFNSVKRIEMKSKELRELLPEYIKVDYIHGQMLARDIKRAIHNFENGNTDVL
IATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRIGRSNKKSYCYMLMNENKTKNAQ
KREESIREFDNLTGIDLSMEDSKIRGVGEILGEKQHGAVETFGYNLYMKMLNEEILKLKG
ENEEELEDVNIELNFPRFLPDNYIEKNEKIKIYKRALALKTFEELEDLHKELEDRFGRLK
SEAKGFFEFLKIRIRARELGIVSIKEDKEKRILINFNEEKINVDKIIYLLANKKIMYSKF
TRTIGFDGDIFEFFDLYSN
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaatttagaggagaaatcccattttggctaaaaaataaaaagaatagtata
gtctatgtctgctcatctaatagaaatatagatgattatttttttgtgctaaaagatttc
tataaaggaagaattctcagaataaaaaaagaaaatgaaaatggagaactaaagaaatat
aattatgatctattagaacttctaaaatcagatgaaaaatttataatcttaatctcttta
gaatatttcttagaagattattattctaaggctaacagtatttttattgaaaaaggaaaa
gaagtagatataaaagccttggaagaaaagttgatagaagcagagtttgaaaaaacatat
atgcttactcaaagaaaagaatattcaataagaggggatatcttagatatttttaatatc
aatcaagaaaatcctgtgagaatagaattttttggaaatgaagttgatagaataacatat
tttgacttacattctcaattaagtattgaaaaattagacagtatagaactgtatatagac
aataataaagataaaaaagatttcttctctcttatgtatacaaataaaaataaagtggaa
tattactatgaaaataatgatattttacaagcaaaagttaaaagacttatgggtgaaaat
tcagatagagaaaatgacataataaacaaaataacagaactctctaaaataggaaagcag
atagaaatacaaaaatttacagaagaagaattaaagcagtttgaagttatagacagaata
aaaaaattatctgaaaatacaaatatagtaatttactcagaggaagccacaagatacaaa
gaaatatttaagggctatgatattaaatttgaaaagtatccgctttttgaaggttataga
acagaggataagctaatactgacagatagagaaataaaaggtattagagtaaaaagagaa
agagttgaaaagaaggctctaaggtataagactgtcgatgaaatagcagaacaagattat
gtaatacatgaaaattttggtgtaggaatattcttaggtctagaaaatattgatggacag
gattacttaaagataaaatatgctgatgaagacaagttgtatgttcctcttgatggtata
aataagatagagaagtatattaatatttctgatgttatacctgaaatatataaacttgga
agaaaaggttttaaaagaaagaaagctagattgagcgaagatatagaaatctttgctaaa
gaaataataaaaatccaagcaaaaagaaatttagcaaatggttttaagttttcaaaagat
actgttatgcaggaagaatttgaagaagcttttccatttactgaaactccagggcaatta
aaggctattgaagatgtaaaaagagatatggagtcaggcaaagttatggatagacttgtc
tgtggagatgttggttatggtaagacagaggtcgctataagggcagcttttaaagctata
atggacgagaaacaagttgtactcttagttcctactactgtactggcagagcaacattat
gaaagatttagtgaaagatttaaaaattatcctataaatatagagattttaagtagagta
caaactaaaaaagagcaggaagaaagtattaaaaagatagaaaatggctcagctgacttg
attatagggactcatagattattatcagatgatataaagtataatgatataggtcttctt
ataatagatgaggagcaaaagtttggagttaaagccaaagagaagttaaaaaaactcaaa
ggtgatatagatatcctaactttaacagcaactcctattcctagaactctaaatttatct
ttattgggaattagagatttatctattatagatacttctccagaaggaagacaaaaaatt
caaacagagtatatagacaataataaagatttaattagagatattataattactgaagtt
tcaagagaaggacaagttttctatatatttaactcagtgaaaagaattgagatgaagtca
aaagaacttagagaacttttacctgagtatataaaagttgactacatacatggtcagatg
ttggcaagagatataaagagagctatacataattttgaaaatggaaacacagatgtttta
attgcaacaactattatagaaaatggtattgatatagagaatgctaatactatgataatt
gaaggagttgaaaagttaggtttatcgcaagtttatcaacttagaggaagaataggtaga
agcaataagaaaagttattgttatatgcttatgaacgaaaataaaactaaaaatgcacag
aaaagagaagaaagtattagagaatttgacaatttaacaggtatagatttatccatggaa
gactctaaaatcagaggagttggagaaatcttaggtgaaaaacagcatggagcagttgaa
acctttggttataatctatatatgaaaatgttaaatgaagaaatattaaaattaaaaggt
gaaaatgaagaagaattagaagatgttaatatagaacttaatttcccaagatttttacct
gataattatatagaaaaaaatgaaaaaataaagatttacaagagggctttagctttaaaa
acttttgaagagctagaagatctacataaggagttagaagacagatttggaagattaaaa
tctgaggcaaaaggtttctttgaattcttaaaaattagaataagggctagggaactaggt
attgtaagcataaaggaggataaggaaaaaaggattttaattaattttaatgaagaaaaa
ataaatgttgacaaaattatttatctcttagctaataagaaaataatgtattctaagttc
acaagaactataggatttgatggagatatttttgagttttttgatttatattctaattaa
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