Fontisphaera persica: NXS98_14645
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Entry
NXS98_14645 CDS
T09048
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpes
Fontisphaera persica
Pathway
fpes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NXS98_14645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpes03400
]
NXS98_14645 (mfd)
Enzymes [BR:
fpes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NXS98_14645 (mfd)
DNA repair and recombination proteins [BR:
fpes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NXS98_14645 (mfd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WCJ61266
LinkDB
All DBs
Position
complement(3905620..3909045)
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AA seq
1141 aa
AA seq
DB search
MAPPGVAFLASWLAHEFPQRVLVVVEDGVKTQEERLQDISSWLALAPASTPPPPVLNYPA
WETFPHEGRLPSIETLSERLATLMALQSLSPASRAPVIVTQVQALMQKTIAPAAWRAHSR
LLRRGDTLHPLDLVEWLEEEGYEPEAKATLPGTLALRGGILDIYPPANPWPVRIEFFGNE
IESLRFFDPATQISREAVEQVTLAPAGELGLLRQGRLATAAWSEHLPANAIVLLHDPARL
VEQANAWRQQAPADEPLLLDWNTARENLASGPRAIVEVSDVLGLLTESGNEISLQSLEAF
RPAAPAAPDPTVADRQRREFLQQLHRWMRQGFAVWLLCHEESQCRRARELWQELRLDEGP
EGKPLQPRMELAAVSQGFLCPAARWVVATDAEIFGRYKAARPRRLKSPQAQAARAAWALD
FSEMAPGDLVVHVRHGIGRYLGLQRLAPSRRPGEPAPDTAGGQECLVIEYAPAREGQPPP
KLYVPVTEAHLVSRYVGAGRARPKLSVLGSRRWAKTRADAEAAAQALAAELLQVQALRAT
QPGHAFPPDGPWQMEFENAFPFEETPDQWKAIHETKRDLEQPRPMDRLICGDVGFGKTEV
AIRAAFKVVMGGKQVAMLAPTTVLAQQHYRTFTERMAAYPVTVEVLSRFRSRREQADILR
RLAGGGVDILIGTHRLLQADVVFKDLGLVIIDEEQRFGVEHKEQLKRLRALVDVLTLSAT
PIPRTLHLALMGARDMSIIETPPPDRLPIETQVAEFDERLIREAIQRELNRQGQVFYLHN
RIEDLAAVAHRVKALVPHARVVMGHGQMPARDLERVMTQFVNGEADVLVSTTIIESGLDI
PNANTIIIDRADRYGLSDLYQLRGRVGRYKHQAYAYLLIPRHAALLNDARKRISAIRQYS
TPGSGFKVAMRDLEIRGAGNILGTEQSGHINAVGFDLYCRLLRQSIARLKGESVPPPLTA
EVRLDFLAFNPSEELPPPPPTPRRRNRPEELHIPREVAVYVPLEDADAEAEDENAGRIGR
HACYLPESYIHEPALRVEAYRRLAAIQREEELESTKAEWRDRFGPLPDAVQRLLLLQEIK
ILAARKGLESLETDGARLKIRRGGDFLQFGGKFPRLQKRSATARLGEIRRFLRQLQDAAP
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
gtggcgccgccgggagtcgcctttctggcatcctggctggcccatgaatttccccagcgc
gtgctggtggtggtggaagacggcgtcaaaacccaagaagaacgcctccaggacatctca
agctggctcgcgctggcccccgcttccaccccgccgccgcccgtgctgaactatcccgcc
tgggaaacctttccccacgagggccgcctgccctccattgaaactttgagtgaacggctg
gccacgctcatggccttgcagagcctttcccccgcctcgcgcgcgcccgtcattgttacc
caggtacaggcgctcatgcagaaaaccatcgcccccgcggcctggcgcgcgcattcccgc
ctgctccgccgtggcgacaccctgcatccgctcgacctggtggaatggctggaggaggaa
ggttacgagccggaggccaaagccaccctgcccggcaccctggctttgcgcggcggcatc
ctcgatatctatcccccagccaacccctggccggtgcgaatcgaattctttggcaacgaa
atcgagtccctccgttttttcgacccggccacccagatttcccgcgaagctgtggagcag
gtgaccctcgcgccggcgggtgaactgggcctgctgcgccagggacgcctcgccaccgcc
gcctggagcgagcatctccccgccaatgccatcgtgctgttgcatgaccctgcccggctg
gtggagcaggccaacgcctggcggcagcaagcccccgccgacgaacccctgttgctggac
tggaatacggcgcgggaaaatctggccagcgggccacgcgccatcgtggaagtctcggat
gtcctgggactcctcaccgaatccggcaacgaaatctccctccaatctttggaggctttc
cgcccggccgccccggccgcgcccgaccccaccgtggccgaccggcaacgccgcgaattc
ctgcaacagctccatcgctggatgcgccaggggtttgccgtctggctgctctgccacgag
gaaagccagtgccgccgcgcgcgcgaattgtggcaggaactccggctggacgaaggcccg
gagggcaaacccttgcaaccccggatggagctggccgcggtgagccagggtttcctctgc
cctgccgcgcgctgggtggtggccaccgacgcggaaatctttggccggtacaaggcggcg
cgtccccgccggctcaagtcgccccaggcgcaagccgcacgcgccgcctgggcgctggac
ttttccgaaatggccccgggcgacctggtggtgcatgtgcgccacggcatcggccgctac
ctcggtctccaacgcctcgccccctcacgtcgtcccggcgagcctgcccccgacacggcc
ggcggccaggaatgtctggtcatcgagtatgcccccgcgcgcgaaggccagccgccgccc
aagctctacgtgcccgtcaccgaagcccacctcgtcagccgctacgttggcgcgggcagg
gcgcggcccaaactcagcgtgctgggcagccgccgctgggccaaaacgcgcgccgacgcc
gaggccgccgcccaggccctggccgcggagctgctgcaggtgcaggccctgcgcgccacc
cagcccggccacgccttccccccggatggcccctggcaaatggaatttgaaaacgctttt
cccttcgaggaaacaccggaccaatggaaggccattcacgaaacaaaaagggacttggaa
cagccccggcccatggaccgccttatctgcggcgatgtcggcttcggcaaaacagaagtg
gccatccgcgccgccttcaaagtcgtcatgggcggcaaacaggtggccatgctcgccccc
accaccgtcctggcccagcagcattatcgcactttcaccgagcgcatggccgcctacccc
gtcaccgtcgaagtgctgtcccgcttccgcagccgccgcgagcaggcggatattttgcgc
cggctggcggggggcggggtggacattctcatcggcacccaccggctgctgcaggcggac
gtggtgttcaaagacctgggcctggtcatcattgacgaagagcagcgctttggcgtcgag
cacaaggaacagctcaaacgcctgcgcgccctggtggatgtgctgaccctcagcgccacc
cccatcccccgcaccctgcacctcgccttgatgggcgcccgcgacatgagcatcatcgaa
accccgccccccgaccgcctgcccattgaaacgcaggtggcggaatttgacgagcgcctc
atccgcgaggccatccagcgcgaactcaaccgccagggccaggtgttctacctccacaac
cgcattgaggacctcgcagccgtagcgcatcgcgtcaaggcgctcgtgccccacgcccgc
gtcgtcatgggccacggccagatgcccgcccgcgacctcgagcgtgtcatgacgcaattc
gtcaacggcgaggccgatgtgctcgtctccaccaccatcatcgaaagcggcctcgacatc
cccaacgccaacaccatcatcattgaccgcgccgaccgttacggcttgagcgacctgtac
cagctccgcggccgcgtcggccgctacaaacaccaggcctacgcctacctccttatcccc
cgccacgccgcgctcctcaacgatgcccgcaaacgcatcagcgccatccgccagtattcc
acccccggcagcggcttcaaagtcgccatgcgcgacctcgaaattcgcggcgccggcaac
atcctcggcaccgagcaaagcggccacatcaacgccgtcggctttgacctctactgccgc
ctcctccgccaaagcatcgcccggctcaagggcgaatccgtccccccgccgttgaccgcc
gaagtgcgcctggactttctggccttcaatcccagcgaggaactgcccccgccaccccca
accccgcgccgccgcaaccgtccggaggaactccacatcccccgcgaagtcgccgtgtac
gtgccgcttgaagacgccgacgcagaggcggaggacgaaaacgccggccgcatcggccgc
catgcctgttacctgcctgaatcctacatccacgaaccggcgctgcgcgtcgaagcctac
cgccgcctcgccgccatccaacgggaggaggagctggaaagcaccaaggccgaatggcgc
gaccgcttcggccccctccccgacgccgtacaacgcctgctgctgctccaggaaattaaa
atcctcgccgcccgcaaaggcctggaatccctggaaaccgacggcgcccgccttaaaatc
cggcgcgggggagatttcctgcaattcggcggcaagtttccccgcctgcaaaaacgcagc
gccaccgcgcggctcggtgaaattcgccgtttcctccgccagctccaggacgccgccccc
gcctga
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