Mangrovivirga cuniculi: DCC35_02265
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Entry
DCC35_02265 CDS
T05953
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpf
Mangrovivirga cuniculi
Pathway
fpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DCC35_02265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpf03400
]
DCC35_02265 (mfd)
Enzymes [BR:
fpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCC35_02265 (mfd)
DNA repair and recombination proteins [BR:
fpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DCC35_02265 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCK13660
UniProt:
A0A4D7JJN1
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All DBs
Position
480261..483629
Genome browser
AA seq
1122 aa
AA seq
DB search
MKASSFLKLYRESSEVNAVAEAIKPNESLNIQLKGISGSLDAVIFSAVFMHNKQNHLLVL
HDKEEAAYFHTDLKNFFPDKDILFFPTSYKRPYSFDETENANILRRAEVLNRMNHKSPSG
EIIVTYPEALTEKVINKRSLLKNTWTASEGDSVDIETLSELLISYDFERADFVYEAGQFA
VRGGIIDIFSFAHDLPFRIELFGDEIDSIRTFDPETQTSQDNVKTLNIIPNVQTRLLEET
RQSILEFLPRNLKVWIKDVSQVLDTVDAYYKKATEDFDSVLKQSMGTKVVLDPKDLFEQK
TSFLDHLNTYPVIEFGNRFYFDDALAINYESESQPSMNKNFTLLGDTLLDYQQKGYSNFV
IAESQRQIERLHNIFDEIDPLIKFEDVTAGIRQGYIDKILQITCFTDHQIFERYHRFKVK
DRHSKSKALTLRELYTLQPGDFVTHIDYGIGRFAGLEKVDVGGNEQEAIRLIYRDNDLLY
VSIHSIHKISKYSGKEGTPPVVSKLGSQEWDNKKKRVKKKVIDIADDLIQLYAKRKATEG
TAFNKDNYLQAELESSFIYQDTPDQAKATADVKSDMEEPHPMDRLVCGDVGFGKTEVAIR
AAFKAVNDGKQVAILVPTTILAMQHYHTLSERLKEFPVVIDYINRFRTTKDIKQILKETE
EGKVDILIGTHRIVNKDVKFKDIGLLVIDEEQKFGVKVKEKLKEFRVNVDVLTLTATPIP
RTLHFSLMGARDLSIIQTPPPNRQPVTTELHTFNEDIIRDAVSYELRRGGQVFFVHNRVN
DIESVANIVLKLVPDARIGIAHGQMQGHQLEKAMLRFIEGEYDVLVSTNIIEAGLDIPNA
NTIIINQAHMFGLSDLHQMRGRVGRSNKKAFCYLLTPPTIGLSTEARKRLSTLEEFSDLG
DGFKVAMRDLDIRGAGNLLGSEQSGFITDLGFDTYHKILDEAIQELKEKKYKDLFEKELS
EKVKNLVPDSNIETDMEILIPEDYVSNIAERLSLYNQADNLKTQEELDKFERNLRDRFGP
LPESVKSLLETVELRWMAQQLGFEKVNLKNGAIKAFCPPSDREEYYNSAIFGSIIGFIQQ
NPRFCRMKETGKRLVLTIQDVESVSKAKEIMKQMMPQEVETS
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggcatcttcattccttaaattatacagagaaagcagcgaagtaaatgctgtagca
gaagctattaagcctaatgagagtttaaacattcaattaaaaggcataagtggcagtctg
gatgcggtgattttttctgcagtatttatgcacaataagcaaaaccacttgttggtattg
cacgataaggaggaggctgcctattttcataccgacctgaaaaactttttcccggataaa
gacatcttgttttttcctacctcatataaaaggccgtatagttttgatgaaactgaaaat
gcaaacatcttacgacgtgctgaagtgttaaacaggatgaatcataaatctccttccgga
gaaataatagttacctatcctgaggcacttaccgaaaaagtaattaataaaaggtcatta
ctcaaaaacacgtggactgcttccgagggtgattccgtcgacattgaaacattaagtgaa
ttacttatctcctacgattttgaacgggcagattttgtttatgaagcaggtcagtttgct
gtgcgaggagggattattgatattttttcttttgcacacgacttacctttcaggatcgag
ctttttggagatgagattgatagcataagaacttttgatcctgaaactcaaacctctcag
gataatgttaagaccttaaatattatcccgaatgttcagaccaggcttttagaagaaaca
cggcagtctatcctcgagtttttaccaagaaatctcaaagtctggataaaagatgtttcc
caggttttagacactgtcgatgcatattataaaaaagcaacggaagattttgatagtgta
ttaaaacaatctatgggtactaaggttgttctcgatccgaaagatcttttcgaacaaaaa
acttcctttctcgatcaccttaatacttatcctgtaatcgagtttggaaatagattttac
ttcgacgatgcactagcaataaattacgagtctgaatcccagccaagtatgaataaaaat
ttcaccttgcttggagacaccttactggattaccagcagaaaggatattcaaattttgtt
attgcagaatcgcaaaggcaaattgaacgtcttcataatatttttgatgagatcgaccct
ctaataaagttcgaagatgttactgcaggcataagacagggttatatcgataaaattctt
caaataacgtgttttacagatcaccagatatttgaaaggtatcacaggtttaaagtaaaa
gacaggcattccaaatcaaaagcattaactctccgtgaattgtacacattacagccagga
gactttgtgacgcatatagactatggaatcggaaggttcgcagggctggaaaaggttgat
gtaggcggaaatgaacaagaggcgatcaggttgatttatcgggataatgaccttttatat
gtttctattcactcgattcataaaatatcaaaatattcaggtaaagaaggaactcctccg
gtggtatctaaattagggtctcaggagtgggataataagaaaaaacgggtgaagaaaaag
gttatcgacatagctgatgaccttattcaattatatgctaagcgaaaagcaactgaaggg
acagcttttaataaggataattatttacaagcggagctggaatcttccttcatttatcag
gacacgcccgatcaggccaaagcaaccgcggatgtaaagtctgatatggaagaacctcac
ccaatggacaggcttgtttgtggagatgttggttttggtaaaactgaagtggcaatcaga
gcagcgtttaaagcagtgaatgatggtaagcaggtagctattctggttccaaccaccatt
ctggcaatgcagcattatcacacattatctgaaagattgaaagagtttcctgtggtaatt
gattatatcaatagattcaggacgacaaaagatattaaacagatactgaaagaaactgaa
gaaggaaaggtcgacattctaatcggtactcacagaattgtaaataaagatgttaaattc
aaggatattggacttctggtaattgatgaggagcaaaaatttggtgttaaagtaaaggag
aagttaaaggagttcagggtaaatgtagatgtgctaactctgacagctactccgattcca
cgaaccctgcacttttcattaatgggagccagggacttaagtattatccagactccacca
ccaaacaggcagcctgtgactactgagcttcatacttttaatgaagatattatcagggat
gctgtgagttatgaacttagaagaggaggacaggtctttttcgttcacaaccgggtaaac
gacatcgaatctgttgcaaacattgtattaaaactagtgccagatgcaagaattggaatt
gcccatggtcagatgcagggacatcagctggaaaaagcaatgctgagatttatagaggga
gaatacgatgtgctggtatcgaccaatattattgaagccggacttgatattccaaacgcc
aacaccatcataattaaccaggcccatatgttcggcttgtccgatttgcatcagatgcga
ggaagagtagggcgtagtaataaaaaggcattttgttatttattaacacctccaacaatt
gggctttcgactgaggcgaggaaaagattaagtacattggaagaattttctgaccttggc
gacggctttaaagtagctatgagagaccttgatattagaggagccggaaatttgcttgga
tcagaacaaagtgggtttatcactgatcttggatttgacacttatcacaagattctggat
gaagctatacaagaacttaaagagaagaaatataaggatctgtttgagaaagaactttca
gagaaagttaaaaacctggttcctgattccaatatcgagacagatatggaaattcttatt
ccggaagattacgtatctaatatagcagaaaggcttagtctttataaccaggctgataac
cttaaaacacaagaagagctcgataagtttgaaagaaacctgagagaccgttttggcccg
ttacctgaaagtgtaaagtcgttacttgaaacagtagaattaagatggatggctcagcag
cttgggtttgaaaaggtaaatctgaaaaatggcgcgatcaaagcgttttgccctccgtcc
gacagggaagaatattataattcagcaatttttggttcaatcattgggtttattcagcaa
aacccaaggttttgccggatgaaggaaacaggaaaacgcctggtgttaacaatacaagat
gttgaatcggtttctaaagcaaaggaaataatgaaacagatgatgcctcaggaagtcgag
acatcttaa
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