Flavobacterium plurextorum: NLG42_05710
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Entry
NLG42_05710 CDS
T08840
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fplu
Flavobacterium plurextorum
Pathway
fplu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fplu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NLG42_05710 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fplu03400
]
NLG42_05710 (mfd)
Enzymes [BR:
fplu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLG42_05710 (mfd)
DNA repair and recombination proteins [BR:
fplu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NLG42_05710 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UUW10299
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All DBs
Position
1223577..1226942
Genome browser
AA seq
1121 aa
AA seq
DB search
MSKNALYTTYDNLPKAQQIATSLLEGNQVKMNLSGLLGSAVSFIIRSVFKKTELPFLIVL
DNKEEAAYYLNDLEQMIGEQDVLFYPASFRRPYHIEETDNANVLLRAEVLNRINSRKKPA
IIVTYPEALFEKVVTRRELDKNTLKVALNDKISIDFINEVLFEYEFKRVDFITEPGEFSV
RGGIVDVFSFSNDHPYRIEFFGNEVDSIRSFDVETQLSVETHKKITIIPNVENKIFQENR
ESFLDYIAEKTVLFIQNTDGLFSQLDKQFARAEEAFEKLSKEIKHAEPEKLFLNQASFIK
RALDFSIVELASKPIFKTTKKFEFHFQPQPSFNKQFDLLLNNLSDNHFNGYKNYLFCSNE
TQAKRFHDIFESLDEANSENIRKQYNTIVLPLYQGFIDEENQITAYTDHQIFERYHKFNI
KNGYSKKQNITLKELTALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIV
YVSIHSLHKISKYNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEK
GFQFAPDSYLQNELESSFIYEDTPDQTKSTAEVKADMESDRPMDRLVCGDVGFGKTEVAI
RAAFKAVDNSKQVAVLVPTTILAYQHYRTFTERLKDMPVTIGYLNRFRTAKQKTQTLKDL
AEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEEIIRDAISYEIQRNGQVFFINNRI
ENIKEVAGMIQRLVPNARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSEL
GSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEEN
DIETKEYVKDLQIDTDFELLFSDEYINNVTERLSLYNELGSVKNEEELIVFQNKLIDRFG
PMPPRANALMNSIRIKWIATAVGIEKLVMKKGKMIGYFVSDQQSDYYQSKRFHKVIKFVQ
THSNLCTMKEKQTPNGLRLLLTFDNVKSTKRALELMEMLGE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaacgctttatatactacctatgacaatttgccaaaagcacagcagattgcc
acaagtttactggaagggaatcaggtaaaaatgaatcttagcggattgttgggatctgcg
gtttcatttataattcggtctgtctttaagaaaacagaattgcctttcttgattgtttta
gacaacaaagaagaagctgcttattatttgaatgatttagagcaaatgattggtgagcag
gatgttttgttttatcccgcttcatttcgtcgtccgtatcacattgaagaaacagataat
gcaaatgttttgcttcgcgctgaggttttaaatagaatcaattcgcgaaaaaaaccagcc
ataattgttacttatccagaagcgctttttgaaaaagtggttacgagaagagaacttgat
aaaaacactttaaaagtagctttaaacgataaaatttcaattgattttatcaacgaagtc
ttgtttgaatacgaatttaaaagagttgattttattacagaacctggagaattttcggtt
cgtggaggaattgtcgatgtcttttctttctcaaacgatcatccgtatagaatagagttt
tttggaaatgaagtagacagtattcgaagttttgatgtagaaactcagttatctgtcgaa
acacataaaaaaattacgattatcccgaatgtcgaaaacaagatatttcaggaaaaccgc
gaaagctttttagactatattgccgaaaagactgttcttttcattcaaaatacagacgga
ctttttagccagttagacaaacaatttgcaagagcagaagaagcttttgagaaattgtcg
aaagaaataaaacatgccgagccagaaaagctattcttaaaccaagcgtcgtttattaaa
cgagctttagatttttcgattgttgaattggcttcaaaaccaattttcaagacaactaaa
aagttcgaatttcattttcagccgcagccatctttcaataagcaatttgatttattgctg
aataatctgagcgacaatcattttaatggatataaaaattatttattctgttcgaatgaa
acacaggcaaaacgttttcacgatatttttgaaagtttagatgaagccaattctgagaat
atcagaaaacaatataatacaattgtactgcctttataccaaggttttattgacgaagag
aatcaaataactgcttacacagatcaccagatttttgagcgttatcataaattcaacatt
aaaaacggatattcgaaaaagcagaatattacgctaaaagaattaacagcactttctgtt
ggtgattatgttacgcacatcgatcacggaattggaaagtttggcggcttgcagaaaatt
caagttgaaggtaaaacgcaggaagccataaaattggtttatgccgataatgatattgtt
tatgtaagcattcactcacttcataaaatttctaaatacaacggaaaagacggaactcca
ccgaaaatctataaacttggatcgaacgcttggaaagttttaaaacaaaaaaccaaagcg
cgtgttaagcatattgcattcaacttaattcagttatatgcaaaacgaagattagaaaaa
ggttttcagtttgcgccggatagttatttgcaaaacgaattagaaagttcatttatttac
gaagatacacccgatcaaaccaaatcgacagcagaagtaaaagcggatatggaaagcgat
cgcccaatggatcgattggtttgtggtgacgttggtttcgggaaaacggaagttgcaatt
cgtgctgcttttaaagctgtagataacagtaaacaagtggcagttttagttcctaccact
attttagcgtatcagcattatagaacttttacggaacgattaaaagatatgcccgttaca
attggctatttgaatagatttagaacggcaaaacaaaaaacacagacgctaaaagatttg
gccgaaggaaaactcgatattgtaattggaacacatcaattagtaaacaaaaatgtagtt
tttaaagatttaggtttattgattgtcgatgaggaacaaaagtttggagttaacgtaaaa
gataaacttaaaaccattgctgcaaatgtcgatacgttgacattaacagcaactccaatt
ccgagaacgcttcagttttctttaatggcagccagagatttgtcggtaattactacgcct
ccgcctaatagatatcctattgaaaccaatgtagttggttttaatgaagaaattattcgt
gatgcaatttcgtatgaaattcagcgaaacggacaggttttcttcatcaataatagaatt
gaaaatataaaagaagtcgctggaatgattcagcgtttggttccaaatgcgagagttgga
attggtcacggacaaatggacggtgcgaaacttgaggaattgatgttaggtttcatgaac
ggagattttgatgttttggtggcaaccacaattatcgaaagcggattggacgttccaaat
gccaatacaattttcattaataatgccaataattttggtttatcagatttgcatcaaatg
cgcggccgtgttggtcgaagtaacaaaaaagcattctgctattttatttgtccgccatat
tcgtcaatgaccgaagatgctagaaaacgtattcaggctttggagcagttcagtgaactg
ggaagtggttttaatatcgcaatgaaagatcttgaaattcgtggagcgggagatttgtta
ggcggtgaacaaagtggtttcattaatgaaattgggtttgatacgtaccaaaaaatcatg
aacgaagcaatcgaagaattaaaagaaaacgaatttaaagatttgtaccctgaagagaat
gatattgaaacgaaagaatacgtaaaagatctacaaattgatactgattttgagttgtta
ttttctgatgaatatatcaataatgttaccgaacgtttgagtttgtataacgaattgggt
tctgtgaaaaatgaagaagaattaattgtttttcaaaacaaattaattgaccgttttggt
ccaatgcctccgcgtgccaatgcattgatgaatagtattcgcatcaaatggattgctact
gcagtaggaattgaaaaattggtaatgaaaaaaggtaaaatgattggctattttgtttct
gatcaacaatcagattattatcaatcaaagcgttttcataaagtgataaaatttgtgcaa
acccacagtaatctttgtacgatgaaagaaaaacaaacacctaacggcttacgactttta
ttgacttttgacaatgtaaaatcgactaaaagggctttagagttgatggagatgctgggg
gaataa
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