Flavobacterium plurextorum: NLG42_10570
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Entry
NLG42_10570 CDS
T08840
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fplu
Flavobacterium plurextorum
Brite
KEGG Orthology (KO) [BR:
fplu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NLG42_10570 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fplu03400
]
NLG42_10570 (ligD)
Enzymes [BR:
fplu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NLG42_10570 (ligD)
DNA repair and recombination proteins [BR:
fplu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NLG42_10570 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
GH3
DNA_primase_S
Ripply
Motif
Other DBs
NCBI-ProteinID:
UUW11231
LinkDB
All DBs
Position
complement(2395836..2397881)
Genome browser
AA seq
681 aa
AA seq
DB search
MAEKKTSNGSQELKALLQAGTPAGMPAGIKPMLATLVNEPFDDPLWIYEVKWDGYRSIAY
INKGEVSLSSRNNKPFTDKYYPITNALQHWKNNAVLDGEILVIQDDGKADFSALQNWRSE
ADGHLVFYVFDILWYNGINLMDLELSQRQEILKDILPSDDDRIRLSQPFSGGIDFFETAS
KMGLEGIMAKMKDSLYSPDSRNKQWLKIKANKRQEVVIAGYTKNDSSSKLFSSLLLGVYH
NGQLVYTGKVGTGFTDKMQREMMEQFKPLITKTIPFASEPDINKPSRFRPNPPHAQAVWL
KPVLVCEVSFAEITADGVFRHPSFEGMRIDKKAVDVALEKEDSASSIVKDGKTSRKKFVS
SPLTAPGKSSRGTLLNPSDETQTKKIKGHNLTFSHLSKIYWPEDGFTKRDMFNYYYQAAE
YILPYLKDRPLSLNRFPGGIHGKSFYQKDVKGKAPEWADTFPYTTSDAESKEFLVGGDEK
TLLYMASLGCIEMNPWFSRVQHPDNPDYCVIDLDPDQNTFEQVIRAACEVKNILDTLDIT
GYVKTSGSTGIHIYIPLGAKYSYDQSQMFAKMIVSIVHSQLPDFTSLERQIKNRGGKMYL
DFLQNRPGATIACPYSLRPKPGATVSMPLHWEEIKKGLAMKDFTIENSIVRMRAEGDIFK
GSLQKGINMKKAVAKAQSIFF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaaaaacttcaaatggcagtcaggagctcaaagcgcttctgcaagccggc
acgcccgctggaatgcccgctggtattaagccgatgctggcaacactggtaaacgagccc
tttgatgatcccctttggatttatgaggtaaaatgggacggataccgctcgatcgcctat
atcaataagggagaggtctcgctttcctcccgcaacaataaaccctttacagataaatat
tatccgatcacaaatgcattacagcactggaaaaacaatgctgtgctggatggggaaatt
ttggtaatccaagacgatggaaaagcagatttcagcgcccttcagaactggcgcagcgaa
gcggacggacacctggtcttttacgtttttgatattctctggtacaacggcattaacctt
atggatctggaactctcccagcgccaggagatcttaaaagatatactcccaagtgatgac
gacaggatccgcctgagccagcctttcagcggcgggatcgacttctttgagactgcctca
aaaatgggacttgaaggcattatggccaaaatgaaagattccctttacagccctgacagc
cgaaacaaacagtggcttaaaatcaaagcaaacaagagacaggaagtagtgattgcagga
tataccaaaaatgattcttcttccaagcttttcagctcgctcctgctgggtgtctatcac
aatggacagctggtatatacgggcaaagtcgggaccggatttacggataagatgcagagg
gaaatgatggagcagttcaaaccgcttataaccaaaacaattccttttgcctcggagccc
gatataaacaagccctcacgtttccgccctaatcctccgcatgcccaggcggtatggctt
aagcctgttctggtctgcgaggtcagctttgccgaaatcaccgctgacggggttttccgc
cacccttctttcgaaggcatgcgaatcgataaaaaagcagttgatgtcgcacttgaaaaa
gaagactctgcttcatcgattgttaaagatggtaaaaccagcaggaagaagtttgtctct
tcgcctcttacagcacccgggaaatcttcacgcggcactctgctgaacccgtcagacgaa
acgcagaccaagaaaattaaaggccataatctcaccttttcccacttaagcaaaatctat
tggcctgaggacggtttcactaaacgcgacatgttcaattactattatcaggcggcagaa
tatatccttccttatctcaaggaccgcccactatcgctgaaccgctttccaggcggtatc
cacggcaaaagcttctaccagaaagatgtcaaaggaaaagcgcccgaatgggcagatacc
tttccctacaccacaagtgacgcggaaagcaaggaatttcttgtcggcggcgacgaaaaa
acgcttttgtatatggcatcgctcggctgcattgaaatgaacccatggttcagccgtgtg
cagcatcctgataatcccgattactgcgtaattgaccttgacccggaccagaatactttc
gaacaggtcatccgcgctgcctgcgaggttaaaaatatactcgatacgctggatatcacg
ggttatgtgaagacatcaggctcaacaggaattcatatttatataccgctgggcgccaag
tacagctacgaccagtcgcagatgttcgcaaagatgatcgtatcgatcgtgcattcacag
cttccggacttcacaagcctggagcgccagattaaaaaccgcggcggaaagatgtacctt
gattttctgcagaaccgtccgggcgcaaccattgcatgtccttactcccttcgtccgaaa
ccaggagctactgtgtcgatgcctctgcattgggaggagattaaaaaagggctggcaatg
aaagatttcaccatagagaattccattgtcagaatgagggccgaaggcgatatttttaaa
ggatcgctgcaaaaaggaattaacatgaaaaaagcggtggcaaaagcccagagcatcttt
ttttga
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