Fusobacterium polymorphum: ERS445057_00087
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Entry
ERS445057_00087 CDS
T08899
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpol
Fusobacterium polymorphum
Pathway
fpol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ERS445057_00087 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpol03021
]
ERS445057_00087 (rpoC)
03400 DNA repair and recombination proteins [BR:
fpol03400
]
ERS445057_00087 (rpoC)
Enzymes [BR:
fpol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ERS445057_00087 (rpoC)
Transcription machinery [BR:
fpol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ERS445057_00087 (rpoC)
DNA repair and recombination proteins [BR:
fpol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ERS445057_00087 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
PTS_EIIA_1
Motif
Other DBs
NCBI-ProteinID:
CKG61468
LinkDB
All DBs
Position
1:90955..94914
Genome browser
AA seq
1319 aa
AA seq
DB search
MGIRSFEKIRIKLASPEKILEWSHGEVTKPETINYRTLNPERDGLFCEVIFGPTKDWECS
CGKYKRMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGIS
SKELESVLYFARYIVTSSQEQTVEVGKILTEKEYKLLKQLYGNKFEAYMGADGILKLLSA
IDLEKLRDELENELVDANSAQKRKKLVKRLKIVRDFIASGNRPEWMILTNVPVIPAELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIKAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK
MALELYKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHR
LSIQAFQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNII
SPSSGEPIAVPSQDMVMGCFYMTKERPGEKGEGKLFSNIEQVITAYQNDKVGTHALIKVR
MNGELVETTPGRVLFNEILPEIDRNYHKTYGKGEIKALIKSLYEAHGFTETAELINRVKN
FGYHYGTFAGVSVGIEDLEVPPKKKDLLNKADKEVAQIEKDYKSGKIINEERYRKTIEVW
SRTTEAVTKAMMDNLDEFNPVYMMATSGARGNVSQMRQLAGMRGNMADTQGRTIEVPIKA
NFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNEEDCHTHEGIE
VEALVGANGKVIEKLSERINGRVLAEDLVHKGKKIAKRNTMIHKDLLDKIEELGIKKVKI
RSPLTCALEKGVCQKCYGMDLSNYNEILLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVAG
AATVVNSKKAENDGEVSFRDIKTIEIDGEDVVVSQGGKIIIADNEHEVDSGSVIRVKEGQ
KVKEGDVLVTFDPYHIPIISSHDGKVQYRHFTPKNIRDEKYDVHEYLVVRSVDSVDSEPR
VHILDKKNEKLATYNIPYGAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELF
EARNPKGKATLAEIDGRIEILPTKKKQMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLK
IKAGDKITEGAISPYDVLSIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRK
VRIVDSGASLFLEDEVIEKRVVDLENKKLEEEGKALIKYEPVIQGITKAAVNTGSFISAA
SFQETTKVLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKAIKIKYNSEEKPEEE
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgggaataagaagttttgaaaaaattagaataaaattagcatctcctgaaaaaatattg
gaatggtctcatggggaagtaacaaaacctgaaactataaattatagaacactaaatcca
gaaagagatggattattctgtgaagtaatatttggaccaacaaaggattgggaatgttct
tgtggaaaatataaaagaatgagatataaaggcttagtttgtgaaaaatgtggagttgaa
gtaacaagagctaaagttagaagagaaagaatgggacatataactttagcttctcctgtt
tctcatatttggtactcaaaaggaagcccaaataaaatgtctttaattattggtatctca
tcaaaagaattggaatcagttctatattttgcaagatatatagtaacttctagccaagaa
caaactgttgaagttggaaaaatattaacagaaaaagaatacaaattattaaaacaatta
tatggaaataagtttgaagcatatatgggagcagacggaatcttaaagcttctttcagct
attgacttagaaaaattaagagatgaattagaaaatgaattagtagatgctaattcagct
caaaaaagaaaaaaattagtaaaaagattaaaaatagttagagactttatagcttctgga
aatagacctgaatggatgatacttacaaatgttcctgtaattccagcagagcttagaccc
atggttcaacttgatggtggaagatttgcaacttcagatttaaatgatttatatagaaga
gttataaatagaaataatagacttaaaaagttattggaaataaaagcacctgaaattgtt
gtaaaaaatgaaaaaagaatgcttcaagaagcagtagatgctcttattgataatggtaga
agaggtaaaccagtagttgctcaaaataatagagaattaaaatctttatctgatatgtta
aaaggaaaacaaggaagatttagacaaaacctactaggaaaaagagttgattattcagca
agatctgttatagttgttggaccatctttaaagatgaatcaatgtggtatacctaagaaa
atggctcttgaattatataaaccatttataatgagagagttagtaagaagagaattagct
aataatattaaaatggctaaaaaattagttgaagaatctgatgataaagtttgggcagta
atagaagatgttattgctgatcaccctgtacttttaaacagagcccctacattacataga
ttatcaatacaagcattccaacctgtattgatagaaggtaaagctataagattacaccct
cttgtttgttctgccttcaatgctgactttgatggggaccaaatggctgtacacttaact
ttatctcctgaatcaatgatggaagccaaacttttaatgtttgctcctaataatattatt
tctccttctagtggagaacctattgcagttccatctcaagatatggtaatgggatgtttc
tatatgacaaaagaaagacctggagaaaaaggagaaggtaaactattctctaatatagaa
caagttattactgcttatcaaaatgataaagttggaactcatgctctaataaaagttaga
atgaatggagagttagttgaaacaactccaggaagagtattatttaatgaaattttacca
gaaatagatagaaattatcataaaacttatggtaaaggagaaataaaagctttaattaaa
tctctatatgaagctcatggctttactgaaacagcagaacttattaacagagttaaaaac
tttggataccactatggtacatttgcaggagtttcagtaggaatagaagatttagaagtt
ccacctaagaagaaagatttattgaataaagcagacaaagaagttgctcaaatagaaaag
gattataaatctggaaaaattataaatgaagaaagatatagaaagacaatagaagtttgg
tcaagaacaactgaagcagttactaaggcaatgatggataacttggatgaatttaaccca
gtttatatgatggcaacatcaggagccagaggtaatgtaagccaaatgagacaattagct
ggaatgagaggaaacatggcagatacacaaggtagaaccatagaagttcctataaaggct
aactttagagaaggactaacagtattggaattctttatgtcttcacatggagcaagaaaa
ggacttgccgatacagcattaagaactgccgattcaggatatttaacaagaagacttgtt
gatatttctcatgaagttattgttaatgaagaagattgtcatactcatgaaggaatagaa
gttgaagcacttgttggtgcaaatggtaaagtaattgaaaaattaagtgaaagaattaat
ggtagagttttagcagaagaccttgttcataaaggaaagaaaattgctaaaagaaatact
atgattcataaagacttattagataaaattgaagaattaggaattaagaaagtaaaaata
agatctcctttaacttgtgcattagaaaaaggagtttgtcaaaaatgttatggtatggac
ttatcaaactacaatgagattttattaggagaagcagttggagtagttgctgctcaatca
ataggagaacctggtactcagcttacaatgagaacattccatacaggaggagttgcagga
gcagctactgttgtaaattctaaaaaagctgaaaatgatggtgaagtatcatttagagat
attaaaactattgaaattgatggtgaagatgtagttgttagccaaggtggaaaaatcatt
atagctgataatgaacatgaagttgactcaggttcagtaataagagtaaaagaaggacaa
aaggtaaaagaaggagatgtacttgttacatttgacccttatcatattcctataatttca
tctcatgatggaaaagttcaatatagacattttactcctaaaaatataagagatgaaaaa
tatgatgttcatgaatatctagttgtaagatctgttgacagtgttgactcagaaccaaga
gtacacatacttgataagaaaaatgaaaaattagctacttataacattccttatggtgca
tatatgatggtaagagatggggctaaagttaaaaaaggtgacatcatagctaagattatc
aagttaggagaaggtactaaggatatcactggaggtcttccaagagtacaagaattattt
gaagcaagaaatccaaaaggaaaagcaacacttgcagaaatagatggaagaatagaaata
ttgccaactaagaaaaaacaaatgcgtgttgttaatgttagatcattagaaaatccagaa
gaatttaaagaatatttaattcctatgggagaacgtctagttgttactgatggattaaaa
ataaaagctggagataagataacagaaggagcaatttctccttatgacgtactaagtatc
aaaggtcttgtagcagctgaacaatttatacttgagtctgtacaacaagtgtatagagat
caaggggttacagttaatgataaacatatagaaattattgttaaacaaatgtttagaaaa
gttagaatagttgattctggagcatctttattccttgaagatgaagttatagaaaagaga
gttgtagaccttgaaaacaagaaattggaagaagaaggaaaagcacttattaaatatgaa
ccagttatacaaggtatcacaaaagcggctgtaaatacaggaagctttatatctgctgct
tcattccaagaaacaacaaaagttttatcaaatgctgctattgaaggaaaggttgactac
ctagaaggattgaaagaaaatgtaattttaggtaagaaaattccagcaggaacaggattt
aataaatataaggctataaagattaaatataacagtgaagaaaaaccagaagaagaataa
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