Frischella perrara: FPB0191_01194
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Entry
FPB0191_01194 CDS
T03525
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpp
Frischella perrara
Pathway
fpp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FPB0191_01194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpp03400
]
FPB0191_01194
Enzymes [BR:
fpp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPB0191_01194
DNA repair and recombination proteins [BR:
fpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FPB0191_01194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJA45018
UniProt:
A0A0A7S0N2
LinkDB
All DBs
Position
1346541..1349984
Genome browser
AA seq
1147 aa
AA seq
DB search
MSDIKLPTKAGTVLEYGQLIGSSLALFCAQVLAQHQGTIVIITDDMQQTTRLHEELKQYT
SYPTLLFPDWETLPYDSFSPHQDIISERLSTLHQLPQLTQGVLILPINTLMQKVCPISYL
NGHVFIMQKGQILSRENLRLQLENASYRHVSQVMEHGEYATRGALFDIFPMGSDVPYRID
FFDNEVDSIRIFDVETQRTLDEINQIQLLPAHEFPFDKSAIELFRSQWRENFPVRLESES
LYQQVSKNILPTGIEYWQRLFFNEPLIPLFDYLPENTLLISTKNIHNHAEKFWLDIQAQY
ESRNVDPMRPLLQPKDIWLNTNETFALFKRYPRISISQENLMTKNAVNMHFTELPDLAIQ
IQQKEPYLLFKQFINNFEGNIIFSVESEGRREALQDILRRIQIFPTFIKKIDDIQVDSVN
QFYLMIGASEKGFIDQTNHFAIITENELLGRRIIRRRKETKQTINTDALIGSLAELTPGK
PVVHLEHGIGRYAGLTTLEAGGVTAEYLILIYANDTKLYVPVSSLNLISRYSGGNEENAP
LNKLGTDAWSKARLKAAEKVRDVAAELLDIYAQRESKPGFAFKQDREQYELFCQSFPYQE
TDDQLNAIGAVIGDMCAPYAMDRLVCGDVGFGKTEVAMRAAFLAVINHKQVAVLVPTTLL
AQQHYENFCDRFANWPIRIESLSRFKTAKQQQQVIQALEDGKVDIVIGTHKLLQADVKWH
DLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATAPA
RRLAVKTFVREYDNYVIREAILREILRGGQVYYLHNDVADIENRRDKLQELIPEARIAIG
HGQMHERELERVMNDFHHQRYNLLICTTIIETGIDIPNANTIIIERADKFGLAQLHQLRG
RVGRSYHQAYAYLLTPPPKALTKEAKMRLDAIASLEDLGAGFALATHDLEIRGAGELLGE
DQSGQIESIGFNLYIELLDEAVKSLKSGKEPSLDTLLNNQQTEIELRLPALIPDDFIPDV
NARLSLYKRIASIDDLNQLTDIKIEMIDRFGKLPDPVLFLLELTKLRYIAQQLGIKKIEL
TKKGGYIEFSEANQVSVDYLISLIQKDPRSYRLDGQNRLKLLRMELQGQQRIDYLMNLLE
QFALNKE
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatataaaactacccacaaaagctggcacggtattggaatatggtcagttaatc
ggttcttccttagcattattttgtgcgcaggtattagctcaacatcagggaaccattgta
attattacagatgacatgcaacaaacaacacgcttgcatgaggaattaaagcaatatact
tcctatccaaccctattatttccagattgggaaactctaccctatgacagcttctctccg
caccaagatatcatatctgaacggttatcaacgcttcatcaattgcctcaattgactcaa
ggcgtattaattctacctattaataccctgatgcagaaagtttgtcctatttcctatttg
aatgggcatgtttttattatgcaaaaagggcaaattttatctcgcgaaaatctaagatta
caattggaaaatgctagttatcgacatgtaagtcaagtcatggagcatggagaatatgca
accagaggggcattattcgatattttccctatgggaagtgatgttccttatcgtattgat
ttctttgataatgaagttgatagtatccgtatttttgatgttgagacacaacgaacttta
gacgaaattaatcaaattcaattattgcctgcccatgagtttccttttgataaatcagca
atagaattgtttcgttcccaatggcgtgaaaattttcccgtacgcttagaatcagaaagt
ctttatcaacaagtatcaaaaaatattcttcccaccggtattgagtattggcagcgactt
ttttttaatgaaccactcatccctttatttgattacttacctgaaaatacgttattaata
tcaacaaagaatatccataatcatgctgaaaaattttggttagatatacaggctcaatac
gaaagtcgtaatgtggatccaatgcgtcccctacttcaaccaaaggatatttggttaaat
accaatgaaacctttgctttatttaagcgctatccccgaatatctattagtcaagaaaac
ttaatgactaaaaacgcggtaaacatgcactttaccgaattacccgatttagcaatccaa
attcaacaaaaagagccctatttattattcaaacaatttattaataactttgaaggaaat
attatattttcagtcgaatctgaaggccgtcgtgaagccctgcaagatatattgagacgt
attcaaatttttcctactttcattaaaaaaatagatgatattcaagtagattcagttaat
cagttttatttaatgataggggcaagtgaaaaagggtttatcgatcaaacaaatcacttt
gccatcataactgaaaacgagttattaggtagacgaatcattcgtcgacgaaaagaaact
aagcaaacaataaatacagacgctttaatcggtagtttagctgaattgacgccgggtaaa
cccgtagttcatttagagcatggtattggtcgttatgcaggattaaccactctagaagca
ggtggcgttacagctgaatatttaatattaatttatgcaaatgataccaaactctatgtt
cctgtttcctcattaaacttgatcagtcgttattctggtgggaatgaagaaaatgcacca
ctcaataaattaggtaccgatgcttggagtaaggcacgtctaaaagctgccgaaaaagta
cgtgatgttgctgcagaattattggacatttatgcgcaacgtgaatctaaaccaggattt
gcatttaaacaagatcgtgaacagtatgaattattttgtcaaagttttccctatcaagaa
acggatgatcaattaaatgctattggtgctgtgattggtgatatgtgcgctccatatgca
atggatagattggtttgtggtgatgtaggttttggcaaaactgaagtggccatgcgggct
gcttttttagccgtcattaaccataaacaagtcgcagttttagttccaacaacgctacta
gctcagcaacattatgagaatttttgtgatcgttttgcaaattggcctatcagaattgaa
tcattatcacgctttaaaacagccaaacaacaacaacaggttatacaagcattagaagat
ggcaaagttgacatcgttattggtactcataaattgctacaagctgacgtcaaatggcat
gatttaggtttattaattattgatgaagaacatcggtttggcgttagacagaaagaacga
attaaagctatgcgcgctaatgttgatattttaacattaaccgctacacctattccaaga
actttaaatatggcaatgagtggtatgcgtgatttatcgatcatcgccactgcacccgct
agaagattagctgtaaaaacctttgttagagaatatgataattatgtaattcgagaagcc
atcttacgtgagatattacgtggcggtcaggtttattatttgcataatgatgtggcggat
attgaaaatcggcgtgataaattacaggagcttattcctgaagcaaggattgctatcggt
cacggtcaaatgcatgaaagagaattagaacgtgtaatgaatgactttcatcaccagcgc
tataatttattaatttgtacaacaattattgaaacgggaatagatattcctaatgctaat
acaattattattgaacgggctgataaatttgggctagcacaattacatcaattacgtgga
cgagttggacgctcctaccatcaagcatatgcttatttattaactcccccaccaaaagca
ttaacgaaagaagcaaaaatgcgattagatgcgatcgcttcattagaagatttaggagca
ggttttgctttagctactcatgatctcgaaatacgcggtgctggagagctattaggtgaa
gatcaaagtggtcaaattgaatcaatcggatttaatttatatattgaattacttgatgag
gcagtaaaatctctcaaatcagggaaagaaccgtcgctagatacattacttaacaatcag
caaactgaaatcgaacttagattaccggcgttaattcctgatgattttattccagatgta
aacgctcgtttatctttatataaacgaatagcatcaattgatgatcttaatcaattaact
gatatcaaaatagaaatgatagatcgctttggtaaattacctgatccggttttattttta
ttagaattgactaaactccgttatattgctcaacaacttggaattaagaaaatagaatta
actaaaaaaggaggttacatagaatttagtgaagcgaatcaagtatcggtagattatctt
attagcctaatccagaaagaccctagaagttatcgtttggatggtcaaaatagacttaaa
ttattaagaatggaacttcaaggacaacaacgaattgactatcttatgaatttattagaa
caatttgcattgaataaagaataa
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