Flavobacterium psychrophilum V3-5: IA03_00860
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Entry
IA03_00860 CDS
T03659
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fpv
Flavobacterium psychrophilum V3-5
Pathway
fpv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fpv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IA03_00860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpv03400
]
IA03_00860
Enzymes [BR:
fpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IA03_00860
DNA repair and recombination proteins [BR:
fpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IA03_00860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIG29119
LinkDB
All DBs
Position
complement(195976..199329)
Genome browser
AA seq
1117 aa
AA seq
DB search
MSTKIISKKYSEQAKIVNLLKTIKGDNKIHIKGLVGSSFSFVIEALFAKSENSFLLLCNE
KEEAAYILNDLEQLVSDQDVLFYPSSYRRPYQIEDTDNANVLLRSEVLNRLNSRKKPAII
VSYPEAIFEKVVTKKELDKNTLKISVGDLVSIDFINEVLFEYEFKRVDFITEPGEFSVRG
GILDVFSFSNDNPYRIEFFGNEVDSIRTFDVATQLSIEKKNKIAIIPNFENKFLQENRES
FLEYINPKTTIFIQNTDLLLTHLDKLFSKAQETFEKLNKDIKHASPEQLFLNQKEFIKQS
LNFCVVETASKPTFRTSETFEFHIKPQPSFNKQFDLLLNNLKDNQAHNYKNYLFCSNEQQ
AKRFHDIFESLDEQNHETITKQYETIVLPLYQGFIDEENQIACYTDHQIFERYHKFSIKN
GYSKKQTITLKELTSLVVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLAYADNDIVYV
SIHSLHKISKYTGKDGAPPKIYKLGSGAWKALKQKTKARVKHIAFNLIQLYAKRRLDKGF
AFAPDSYLQHELESSFIYEDTPDQLKSTQEVKADMESDRPMDRLVCGDVGFGKTEVAIRA
AFKAVDNGKQVAILVPTTILAYQHYRTFTERLKDMPVTINYLNRFKTAKQKAETLKDLEA
GKVDIVIGTHQLVSKNVIFKDLGLLIVDEEQKFGVNVKDKLKTITQNVDTLTLTATPIPR
TLQFSLMAARDLSVITTPPPNRYPIETHVVGFNEETIRDAISFEIERGGQVFFINNRIEN
IKEVAGMIQRLVPDAKVGIGHGQMDGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSVMTEDARKRIQALEQFSELGS
GLNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYENDNET
VEKEYVKDLQIDSDFELLFPDDYINSVTERLALYNALAIIKEENGLLEYEKQLIDRFGPL
PKQAIALLNSLRIKWIATQIGVEKLILKQGKMVCYFVSDQQSDYYQSKRFHQVLQFVQKQ
PQLCKMKEKETKNGLRLLLTFENVKSIKKALELMEMV
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgagcacaaaaatcatctctaagaaatacagcgaacaagcgaaaattgttaatctatta
aaaacaattaaaggcgataacaaaattcatattaaaggattggttggttcgtcattttcg
tttgtcattgaagcgttgtttgcaaaaagtgaaaattcttttctattattgtgtaacgaa
aaagaagaagccgcttatatcctgaacgatttagaacaactcgttagcgaccaagatgtg
ttgttttacccaagttcttaccgaagaccgtatcaaattgaagatacagataatgcaaat
gttttgcttcggtcggaagttttaaacagactcaattctcgcaaaaaaccggccattatt
gtttcttatccagaagctattttcgagaaagtggtaaccaagaaggaattagataaaaac
acactcaaaatttcggttggcgatttggtttctatcgattttattaatgaagttttattc
gaatacgaatttaaaagagtcgattttattacagaacccggtgagttttctgttcgtggt
ggcattttagatgtattttctttttcgaacgataatccgtatcgaatcgagttctttggt
aacgaagtagatagtattcgaactttcgatgtggctacacaactatcaatcgaaaagaaa
aataaaattgcgattattcctaatttcgaaaataaatttttacaagaaaacagagaaagt
ttcctagaatacatcaatcctaaaacaactatttttattcaaaataccgatttattatta
acacacttagacaaattatttagcaaagcgcaggaaactttcgagaaattaaataaagat
attaagcatgcttcgcccgagcaattgtttctaaatcagaaggaattcatcaagcaatcc
ttaaatttctgtgtggtcgaaacggcttcaaaacctacttttagaacctcagaaactttc
gaatttcatatcaaaccacaaccctctttcaataagcaattcgatttgttattaaacaat
ttgaaagacaaccaagcacacaattacaaaaattatttgttttgttcgaacgaacaacaa
gccaaacgttttcatgatatttttgagagtcttgatgagcaaaatcacgaaacaataacc
aaacaatacgaaacaattgttttgccattgtatcaaggttttattgatgaagaaaaccaa
attgcgtgttataccgaccaccaaatttttgaacgctatcataaatttagcatcaaaaac
gggtattctaaaaaacaaaccatcacgctcaaagaactaacctctctggtagttggcgat
tatgtaacacatattgatcacggaattggaaaatttggtggactgcaaaaaatacaagtt
gaaggcaaaacacaagaagcaataaaactagcgtatgctgataatgatattgtatatgta
agcattcattcgctacacaaaatatcaaaatatacaggtaaagatggcgccccacccaaa
atttacaaattaggttctggcgcttggaaagctttaaaacaaaaaacaaaagcccgagta
aaacatattgctttcaacttaattcaattgtatgccaaacgcagattagacaaaggattt
gcatttgcgcccgatagttatttgcaacacgagctagaaagttcgtttatttatgaagac
acaccagaccagttaaaatcgacacaagaagtaaaagccgacatggaaagtgatcgccca
atggacaggttggtttgtggcgatgtaggtttcgggaaaacagaagtcgctattcgagct
gcatttaaagcagttgacaacggaaaacaagtcgctattttagttccaactacaattttg
gcataccaacattatcgcacatttaccgaaaggttaaaagacatgcctgttactataaat
tacctcaacagatttaaaaccgccaagcaaaaagctgaaacactcaaagatttagaagct
ggaaaagtagatattgttataggaacgcatcaattggtaagcaaaaatgtaatttttaaa
gatttaggattacttattgtagatgaagaacaaaaatttggggttaatgtaaaagacaaa
ctcaaaaccattacccaaaacgtagatacattaacacttacagcaacaccaattccgaga
actttacagttttcgctcatggcagccagagatttatcggtcattacaacaccgccgccc
aatcgttatcctatcgaaacccatgtggttggttttaatgaagaaacgattcgtgatgct
atttcgttcgaaattgaacgtggcggacaagtattttttattaataatagaatagaaaac
attaaggaagttgctggcatgattcagcgattggttcctgatgccaaagtaggaattggt
cacggacaaatggatggcaagaaactcgaagaactcatgctcgcttttatggaaggcgaa
tttgatgttctggtcgctacaaccattatcgaaagcggattagatgttcccaatgcgaat
acgatttttattaacaatgccaataattttggattatccgatttgcatcaaatgcgagga
cgagtgggtcgaagtaataaaaaagctttttgctattttatttgtccgccatattctgtg
atgactgaagacgctcgaaaacgaattcaagccttagaacaattttcggaactaggaagt
ggtttaaatattgctatgaaagatcttgaaattcgtggtgcaggcgatttattaggtggc
gagcaaagtggctttataaacgaaataggttttgatacttatcagaaaatcatgaacgaa
gccattgaagaacttaaagaaaatgaatttaaagatttgtatgaaaacgacaatgaaaca
gtagaaaaagaatatgtaaaagatttacagattgattctgatttcgaattgttgtttcca
gatgattacataaacagcgtgaccgaacgtttggctttgtataatgctttagccattata
aaagaagaaaatggtttgttagaatacgaaaaacaactcatagatcgttttggaccttta
ccaaaacaagctattgctttgctaaatagcttgcgaataaaatggattgctacccaaatt
ggagtcgaaaaattaatcctcaaacaaggcaaaatggtttgttattttgtatcagaccaa
caaagtgattattaccaatcgaaacgttttcatcaagtattacaatttgtacaaaaacaa
ccgcaattgtgcaaaatgaaagaaaaagaaaccaaaaatggattgaggttgttgttaact
ttcgaaaatgtaaaaagcatcaaaaaagcgctagaactcatggagatggtataa
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