Flavobacterium psychrophilum V3-5: IA03_05175
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Entry
IA03_05175 CDS
T03659
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fpv
Flavobacterium psychrophilum V3-5
Pathway
fpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fpv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IA03_05175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fpv03019
]
IA03_05175
Enzymes [BR:
fpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IA03_05175
Messenger RNA biogenesis [BR:
fpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IA03_05175
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Ground-like
RecQ5
Motif
Other DBs
NCBI-ProteinID:
AIG29895
UniProt:
A0A076P1L2
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All DBs
Position
1133608..1134954
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AA seq
448 aa
AA seq
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MASFEQFNLPKSVQKALNDLQLTTPTPIQEKSFAVIMSGRDMMGIAQTGTGKTFAYLLPL
LKQYTFTNTNTPKIVILVPTRELVVQVVEEVEKLTKYMSVSTLGIYGGVNINTQKKQVYE
GVDILVGTPGRVMDLALDAVIRFDDTQKLVIDEFDEMLNLGFRVQITSILAMLRTKRQNI
LFSATMTDEVDAILNDYFDFPEEVSLAMSGTPLEKIEQLSYNVPNFNTKVNLLKHLLHTN
EEMSRILVFVNNKKIADMLHERIEGDFPDQFGVIHSNKSQNYRLTTMATFQEGELRGLIT
TDIMARGLDISNITHVINFEAPELPEQYIHRIGRTGRADASGIAISFIAPREEEIKFGAE
VLMGKEIEILDLPEEVEISKLLIGPEKEKEVIKFLLKKVKLEGGASHHEKSEKNKKVNLG
GPSKTKKKTGTSVNRNILKTRAAKKKKK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatttgagcagtttaatcttccaaaatcagtacaaaaagcattaaacgattta
cagttaacaacaccaactcctatacaagaaaaatcctttgctgtaatcatgtctggtcgg
gatatgatgggaattgcacaaacaggaactggtaaaacttttgcctatcttttgccacta
ttaaagcaatatacctttacaaataccaatacccctaaaattgtaattcttgttccaacc
cgagaactagtcgtacaagtggtagaagaagtcgaaaaactaacaaaatacatgtcggtt
tctaccttaggaatatatggtggtgtaaacataaatacacaaaaaaaacaagtttacgaa
ggtgtcgatattctagtaggaacaccaggacgcgtcatggatttagcgctagacgctgtg
attcgtttcgatgatacccaaaaattagttattgatgaatttgacgagatgctaaacctt
ggtttccgagttcaaatcacttcaatccttgccatgctaagaaccaaacgtcagaacata
ctattttcggccaccatgactgatgaagttgatgctattttgaacgattacttcgatttc
ccagaagaagtttcgctagcaatgtctggaactcctttagaaaaaatcgaacaattatcg
tataatgttcctaactttaataccaaagttaacctactcaaacatttactacataccaat
gaagaaatgtctcgtattttagtttttgtaaataataaaaaaattgccgatatgcttcac
gaaagaattgaaggcgatttcccagatcaatttggagtcattcactccaataaatcgcaa
aattatcgtttaaccacaatggcaactttccaagaaggcgaattgcgtggtttaattact
accgatattatggcgcgtggtctagacatttcgaacattacacacgttataaactttgaa
gcacccgaacttcccgaacaatatatacaccgtattggtcgtactggtcgtgccgatgct
agcggaattgcaataagttttattgcgcctcgagaagaagaaataaaatttggagccgaa
gttttgatgggcaaagaaattgaaattttagatttacctgaagaagtagaaatctctaaa
ctacttattggtccagaaaaagagaaagaagtgattaaatttttacttaaaaaagtgaaa
ttagaaggtggcgcttctcatcacgaaaaatcagagaaaaacaaaaaagtaaatttaggt
ggcccatctaaaacgaagaaaaaaacaggaacctctgtcaatagaaatattttaaaaact
agagcagcaaagaagaagaaaaaatag
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