Frankia casuarinae: Francci3_3792
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Entry
Francci3_3792 CDS
T00320
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fra
Frankia casuarinae
Pathway
fra03420
Nucleotide excision repair
fra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Francci3_3792
03430 Mismatch repair
Francci3_3792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fra03400
]
Francci3_3792
Enzymes [BR:
fra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Francci3_3792
DNA repair and recombination proteins [BR:
fra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Francci3_3792
MMR (mismatch excision repair)
Other MMR factors
Francci3_3792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
Viral_helicase1
Terminase_5
HHH
Motif
Other DBs
NCBI-ProteinID:
ABD13142
RhizoBase:
Francci3_3792
UniProt:
Q2J6F0
LinkDB
All DBs
Position
complement(4543618..4545828)
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AA seq
736 aa
AA seq
DB search
MMSGPPALAAQAARVRSGNDLLAALDPEQRAAAGAPLGPVCILAGAGTGKTRTITHRVAH
MVAQGGVGPGQILAVTFTARAAGELRGRLRAMGVDGVQARTFHSAALKQLLYFWPSVAGV
ALPKVEKSKIPYVVRAAARLHLRPDRAELRDLTSEVEWAKTTLVTPADYARMAAASGRET
AAPPETVARLYAAYEEVKRDAGVIDMEDLLLLTAAMIEEHSWVAAEVRARYRHFVVDEYQ
DVNDLQQRVLDAWLGERDSLCVVGDPHQTIYSFTGASPEHLLGFPRRFPDAAVVRLIRDY
RSTPQVVGLANTLMRAAPAARLVAARPDGPAPVWLECDSEPAEAAAVASRIRRLLDQGVP
ASEIAVLYRTNAQSEAYEAAIGGAGIAYLLRGGEKFFERTEVVAAMRLLRAAVRSADTDR
PEGLTAAVADILAALGWRADQPTVGSGAEREQWENLAALHRLAGDLAARSPEADLEAFVA
ELGDRATHEHQPTVQGVTLSTLHTAKGLEWDAVFLVGLTEGTLPLVHARTAEQIAEERRL
LYVGVTRARRHLVLSWALSRAEGGRRSRRPSRFLDDLRPMRRESAAGVRHGGRGEGTRPV
AGAEETGPGRSRSRSAVRCRTCGRSLTGVHARVGRCEGCPGDVDAALFERLRVWRSARAK
EQGAPAFVVFTDATLQAIAESRPGTVAELVRLPGIGQAKLDRYGEEVLALVAGRTPPVGS
PPVVESLGSDTPPDAS
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccggaccgcctgccctcgccgcccaggccgcccgtgtgcgatcgggcaacgat
ctgctcgccgcgctcgatcccgaacagcgggccgcggccggagccccgctcggaccggtc
tgcatcctcgccggcgccggtacaggtaagacacgcaccatcacccatcgagtcgcgcac
atggtcgcgcaggggggggtcgggccgggccagatcctggcggtgaccttcacggccagg
gctgcgggagagctgcgcggccggttgcgggccatgggtgtcgatggagtgcaggccagg
acgttccattccgcggctctcaagcaactgttgtacttctggccgtcggtcgccggggtc
gcgctgcccaaggtggagaagagcaagatcccgtacgtggtgcgggcggccgcccgcctg
cacctgcggccggaccgggccgagctgcgcgacctcacctcggaggtcgagtgggcgaag
acgacgcttgtgaccccggcggactacgcccggatggcggcggcgagcgggcgggagacc
gccgctccccccgagacggtcgcccggctctacgccgcgtacgaggaggtcaagcgcgac
gccggtgtgatcgacatggaggatctgctgctgctgaccgcggcgatgatcgaggagcac
agctgggtcgcggccgaggtgagggccagataccgccatttcgtcgttgacgagtatcag
gatgtcaacgacctgcaacagcgtgtcctcgacgcctggctgggggagcgcgacagcctc
tgtgtcgtcggggacccccatcagacgatctattcgttcaccggggcgtcgcccgagcac
ctgctcggattcccgcgccggttcccggacgcggccgtggtgcgtctgatccgagactac
cggtccaccccccaggtggtcggactcgcgaacaccctgatgcgggcggccccggcggcc
cgcctcgtcgccgctcgcccggacggtcccgccccggtgtggctggagtgcgacagcgag
ccggcggaagccgccgcggtggcgtcccggatccgccggctgctcgaccagggcgtgccg
gcgagtgagatcgccgtgctgtaccgcacgaatgcccagtccgaggcgtatgaggcggcg
atcggcggggccggtatcgcctacctgctccggggcggggagaagttcttcgagcggacc
gaggtcgtcgcggccatgaggttgctgcgggccgcggtgcgctccgccgacaccgaccgc
ccggagggactcacggccgctgtcgccgacatcctcgcggcgctcggctggcgggcggac
cagccgacggtgggctcgggcgccgagcgggaacagtgggagaacctcgccgcgctgcac
cggctggccggcgatctcgccgcccgttcgcccgaggccgacctcgaggccttcgtcgcc
gagctcggcgaccgcgcgacccacgagcatcagccgacggtgcagggggtgaccctgtcg
accctgcacaccgccaagggcctggaatgggatgcggtgttcctcgtcgggctgaccgag
ggcacgcttcccctcgtccatgccaggaccgccgagcagatcgccgaggaacgtcgcctg
ctctacgtcggggtgaccagggcccgtaggcacctcgtcctgtcctgggcgctgtcccgg
gcggagggcggccggcggtcgaggcggccgtctcgcttcctcgacgatctgcgtccgatg
cgccgggagtccgcggccggcgtccgccacggggggcgaggcgagggcacgaggcccgtg
gccggggcggaggagaccggcccgggtcggtcccggagcaggtcggcggtgcggtgccgg
acgtgcggccggtcgttgacgggtgtgcacgcgcgggtcgggcgctgcgagggctgcccc
ggcgacgtcgacgccgcgctgttcgagcgcctgcgggtgtggcgttcggcgcgggcgaag
gaacagggggcaccggccttcgtcgtcttcaccgacgccacgctgcaggcgatcgccgag
agccggccgggcacggtggccgagctcgtgcggctgcccggcatcggacaggccaaactc
gaccgttacggggaggaggtactcgccctcgtcgcggggcgcacgccgccggtcgggtcg
ccgccggtggtggagtcactggggtccgacacgccgcccgacgcttcgtaa
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