Frankia sp. EAN1pec: Franean1_0803
Help
Entry
Franean1_0803 CDS
T00608
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fre
Frankia sp. EAN1pec
Pathway
fre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Franean1_0803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fre03400
]
Franean1_0803
Enzymes [BR:
fre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Franean1_0803
DNA repair and recombination proteins [BR:
fre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Franean1_0803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABW10261
RhizoBase:
Franean1_0803
UniProt:
A8L145
LinkDB
All DBs
Position
937766..941332
Genome browser
AA seq
1188 aa
AA seq
DB search
MTLAPLLDALVARPGGDPALTRALGSPDEPVLDLAGPAALRPFAAAAMARAGHTVLAVTA
TGREAEDLADAVGSLLGSERVAVYPSWETLPHERLSPRADTVGRRLAVLRRLAHPGTGGA
TGAGPLAVVVAPVRSVLQPQVARLGELAPVALAKGDTADLEDVTARLVGIAYHRVDLVER
RGEMAVRGGILDVFPPTEEHPLRIEFFGDEVDDIRRFSVADQRALPAEDGEPAAELFAPP
CRELLLTDEVRARAAELAREHPQLVDMLDKIAEGIPVEGMEALAPVLTDEMTLLLDELPA
GSRVLVCDPERVRTRAGELVRTSQEFLDASWSVAALGGGAPIDLGAATYRSVADVRERAA
ELGIPWWSVSPFASEPGAGAEGEGGDTFGDDTVVASLRPATAYHGDTARATADIKGWLAD
SWRVLLVTEGHGPAERLVEMMREADLGARLAADAELAAGVAVVTQAQLGAGFVSPTLRLA
VLTETDLAGARGVTTRDMRRMPSRRRKGIDPLALSAGDLVVHDAHGVGRYVEMVTRTVAG
AKREYLLLEYARGDRLYVPTDQLEQISRYVGGEGPSLDRIGGADWGKRKSRARKAVKEIA
GELIRLYSARMAAPGHAFGPDSPWQRELEDAFPFRETPDQLAAIDEVKADMEKPVPMDRV
ICGDVGYGKTEIAVRAAFKAVTDGRQVAVLVPTTLLVQQHFQTFAERYAPFPVTVKAVSR
FNAPSEQRAVLDGLANGTVDVVIGTHRLLSSETKFSDLGLVIVDEEQRFGVEHKEHLKKM
RTAVDVLTMSATPIPRTLEMSITGIRELSTIDTPPEERHPVLTSVAPYEPRQVTAAIRRE
LLREGQVFFIHNRVESIDRAAAALRELVPEARIATAHGQMNEDALEQVMVSFWEKKFDVL
VCTTIVESGLDISNANTLIVERADNFGLSQLHQLRGRVGRGRERAYAYFLYPADRPLSET
AHDRLATIAQHNDLGAGMAVAMKDLEIRGAGNLLGGEQSGHIASVGFDLYVRMVGEAVAE
YKGEAEEPPEVKVELPVDANLPHDYVPSERLRLDAYRRLAGAVSDADIAEVRGELTDRFG
LLPEPVENLLAVAGLRVLARRFGVTEITVAGRQVRFAPLELRESQTLRLTRLYKGAVVKP
AMRTVLVPAPTETGRIGSRPLRDRALLAWAGQLLEAVAGDSVAAAASR
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcgcgccgctgctcgacgccctagtcgcccgccccggtggtgatccagcgctg
acccgcgcgctgggctcgccggacgaacccgtcctcgacctggccgggcccgcggcgctg
cgcccgttcgcggcggcggcgatggcccgggccggtcacaccgtcctcgcggtgacggcg
accggccgtgaggccgaggacctggccgacgcggtgggcagcctgctgggttccgagcgc
gtcgcggtgtacccgagctgggagacgctgccccacgagcggctctcgccgcgggcggac
acggtggggcgccggctggccgtcctgcgccggctcgcgcacccgggcaccggcggtgcc
accggtgcgggcccgctggccgtcgtggtggccccggtccgctcggtgctccagccccag
gtggcccggctgggtgagctggccccggtcgcgctggcgaagggggacaccgccgacctc
gaggacgtcaccgcccgcctggtgggcatcgcctaccaccgcgtcgacctggtcgagcgg
cgcggcgagatggccgtccgcggcgggatcctcgacgtcttcccgccgaccgaggaacac
ccgctgcggatcgagttcttcggcgacgaggtggacgacatccgccgcttctccgtcgcc
gaccagcgcgcgctgcccgcggaggacggcgagccggcggccgagctgttcgcgccgccg
tgccgggagctgctgctcaccgacgaggtccgggcccgcgcggcggagctggcgcgggag
cacccgcagctcgtcgacatgcttgacaagatcgccgagggcatcccggtggagggcatg
gaggcgctcgcgcccgtgctcaccgacgagatgaccctgctgctggacgagttgccggcg
ggctcgcgcgtgctggtctgcgatcccgagcgggtgcgcacccgggccggcgagctggtc
cgcaccagccaggagttcctggacgcctcgtggagcgtcgcggcgctcggcggcggggcg
ccgatcgacctgggcgcggcgacctaccgttcggtcgccgacgtccgggagcgggccgcc
gagctcggtatcccctggtggtccgtcagcccgttcgcctccgagccgggagccggggcc
gagggtgagggtggggacaccttcggtgacgacaccgtcgtcgccagcctgcggccggcc
acggcctaccacggggacaccgcgcgggccaccgcggacatcaagggctggctcgccgac
tcctggcgggtgctgctcgtcaccgagggccacggcccggccgagcggctcgtcgagatg
atgcgggaggccgatctcggcgcgcggctggcggccgacgccgagctcgccgcgggggtc
gccgtcgtcacccaggcccagctcggcgccgggttcgtcagccccacgctgcgcctcgcc
gtgctcaccgagaccgacctcgccggcgcccggggggtcaccacccgggacatgcgccgg
atgccgagccggcggcgcaagggcatcgacccgctcgcgctgagcgccggcgacctcgtc
gtgcacgacgcccacggtgtcggccgctacgtcgagatggtcacccgcacggtggccggc
gccaagcgcgagtacctgctgctcgagtacgcccgcggcgaccgcctctacgtgccgacc
gaccagctcgagcagatcagccgctacgtcggcggcgagggcccgagcctggaccgcatc
ggcggcgccgactggggcaagcgcaagagccgggcgcgcaaggccgtcaaggagatcgcc
ggcgagctgatccggctgtacagcgcccggatggccgcccccggccacgccttcggcccc
gacagcccctggcagcgtgagctggaggacgccttccccttccgggagacgcccgaccag
ctcgcggccatcgacgaggtcaaggccgacatggagaagcccgtcccgatggacagggtg
atctgcggcgacgtcggctacggcaagaccgagatcgccgtccgggccgcgttcaaggcg
gtcacggacggccgccaggtcgccgtcctcgtcccgaccacgctgctcgtccagcagcac
ttccagaccttcgccgagcggtacgcgccgttcccggtcacggtgaaggcggtgagccgg
ttcaacgcgccgtccgagcagcgcgccgtgctcgacggcctcgccaacggcacggtggac
gtcgtcatcggcacgcaccgtctgctctccagcgagacgaagttctccgacctgggcctg
gtgatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcacctcaagaagatg
cggaccgcggtcgacgtgctcaccatgagcgccacgccgatcccgcggacgctggagatg
tcgatcaccggcatccgggagctgtcgacgatcgacaccccgccggaggagcgccatccg
gtgctgacctcggtggcgccctacgaaccgcgccaggtgaccgcggccatccggcgtgag
ctgctgcgcgaggggcaggtgttcttcatccacaaccgggtggagagcatcgaccgggcc
gccgccgcgctgcgcgagctggtgcccgaggcgcggatcgccaccgcgcacggccagatg
aacgaggacgccctcgagcaggtcatggtctccttctgggagaagaagttcgacgtcctg
gtctgcacgacgatcgtcgagtcgggcctggacatctcgaacgcgaacacgctgatcgtc
gagcgggccgacaacttcgggctctcccagctgcaccaactgcgcgggcgggtcggccgg
ggccgtgagcgcgcctacgcctacttcctgtacccggcggaccggccgctctcggagacc
gcgcacgaccggctggccaccatcgcccagcacaacgacctgggcgccggcatggccgtc
gcgatgaaggacctggagatccgcggtgccgggaacctgctcggcggcgaacagtccggc
cacatcgcgtcggtcggtttcgacctgtacgtccggatggtcggcgaggccgtcgccgag
tacaagggcgaggccgaggagccgccggaggtcaaggtcgagctgcccgtcgacgcgaac
ctgccgcacgactacgtgcccagcgagcggcttcggctcgacgcctaccgccggctggcc
ggcgcggtctccgacgccgacatcgccgaggtccgcggcgagctgaccgaccggttcggc
ctgctgcccgagccggtggagaacctgctcgccgtcgccggcctgcgggtgctcgcccgc
cggttcggcgtcaccgagatcacggtggccggccggcaggtccggttcgccccgctggag
ctgcgggagagccagaccctgcggctgaccaggctctacaagggcgcggtggtcaagccg
gccatgcgcacggtgctggtgccggcgcccaccgagaccggccggatcggctcccggccg
ctgcgcgaccgtgcgctgctggcctgggccggccagttgctggaggccgtcgccggcgac
tcggtggccgccgccgcaagtcggtga
DBGET
integrated database retrieval system
