Pseudofrankia inefficax: FraEuI1c_0109
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Entry
FraEuI1c_0109 CDS
T01354
Name
(GenBank) hypothetical protein
Organism
fri
Pseudofrankia inefficax
Brite
Glycosaminoglycan binding proteins [BR:
fri00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
FraEuI1c_0109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CbiA
AAA_31
ParA
VirC1
CBP_BcsQ
ArsA_ATPase
FTHFS
Motif
Other DBs
NCBI-ProteinID:
ADP78197
UniProt:
E3J3J5
LinkDB
All DBs
Position
complement(129406..134013)
Genome browser
AA seq
1535 aa
AA seq
DB search
MRDDADIDAGNGYPPSSRYTAPPRVDVARAPAGAGPLGPTALPFADGYLGRAAAGEPMTG
PDDPPGYGAPYDRPPGAGRLLGVGAPPRPSVPPPPPPIPPPGGENPRPGASRRGPAGFAE
QAGPPGRRPAPGGTGWRAASPVGPQSFADPAGGGRPPGRAYGDPASNGAANPNGHPGLNG
YADPSGYANPNGNGGPNGGYGGPNSHDPLGYPSPSGQGGPSSHDPLGLSGLNGYAGPPNG
RAAANGQAGSNGYAGSNGHGAPTGHGSQNGYTAQNGYGGPDGYTGQNGYGSQNGYGAQNG
YGGSDGYGGQSGPGGQGQPGRHRLAGGPGSPGPGLQPGTPGPTGRGSDDRGAGRGPGSHG
APGPTGRADGPGWRPAGTDIDVSGPRPAQPRPVPQQPTASPGASRSGFGAGSTPSAPPSD
GFGPYGARPGPPAGPPPNASPWPSDSWNRPGPPAPPPPPPPAAAARPAQAPAGRPAAPSD
QTGFRAQSQGRDGFDAGFSVDSPAARPANGMPNGWSVGAPEHPATRLAALTSAPPAPGRP
LPGAGVPPPGPPAAVGVGEPADHRQNGYPGGRPATVPGPPASWDPLAPSGARPPAELTPA
RLPMDPFATRAAAAPAPGGQDAFGQTGRPGPDPFGRDGRAGSDPFGPTGAQRSAPAPNGA
ANPARPAAPSPNDPFGVTGYGTAPAATASGPADPWSTANSAWAPPPAPAQPSWLLTGLSV
ENPNAPAAPAPTAGHRGTPTAVAGPGSGPGRAGGYPGAAGGTPSSAAQRPGDPFVLGGPA
QPRPVAAGINVDGGPVAGRGPTGTNGPGGTANGFLVNGQNPGAGNGQLTAAGGPGHGHPT
RNGSAFPQGAGPGRAPANGSHLGAGIAVGGGPVPDRPGAAPAGPWIVEGSADQRSPGGQP
AQRLAAGQQAQSGQHLAAGQRFATGQHLAAGHQQAGQQRPGVDPRGAAQPAGAQPPAPVG
PPTQAFDPLFGDLPFGPGAAPSDAFPGALTGQRPASQPAGQPGGPLGVPGGPPMPAGVPG
GPTAGPSGPRPAAPGAAGPGYPARPPMPPPGTPGPPMMPGAPTAFAPLHDRQPDFQPSTQ
FPAPAPSPLPVPPSATAQRPMAPADGRAPMPPRPPAAPPGFADPRRGANAYLPTSPDPVG
RSETGRGQAPPARQRPGRDDLDLFDVSSAPSAIQPAGPPPRRRNTSSDPGRSGLDISGPG
RSNGRHATGHPNAALYSDALLGPAQETAARGWRKVVYQVSGGAVNPGPSPDEARHNRLLG
HIRTPLTDCHRIAVMSLKGGVGKTTTTIGLGSTLADLRDDRVVAIDANPDRGTLGTKAQQ
PSPFTVRDLLEDSHRLSRYVDIRNYMARSDSRLDVLASADDPEISEAFADSDYHAVDDLL
QRYYSILLTDCGTGMLHSAMGGVLALADTLVIVTSSSADGGTSASATLDWLDAHGYAAQV
RDAVAVISMFPQNGDDVDVDALEAHFAARTRRVVRVPWDPHLATGGRISLHALKRETRRA
YQELAAAVAERFAPPELDDLSYPGVNPYRDDRLFS
NT seq
4608 nt
NT seq
+upstream
nt +downstream
nt
atgagggacgacgcggacatcgacgccggcaacgggtatccgccctcgtcgcggtacacc
gctccgccgcgcgtggatgtcgcccgagcaccggccggcgccggcccgttgggcccgacc
gcgctgcccttcgccgacggctacctcggccgggccgccgccggtgagccgatgaccggc
cccgacgacccgcccggctacggcgccccgtacgaccggccgccaggcgcgggccggctg
ctcggcgtcggcgctccgccgcggccatcggtcccgccaccgccgccgccgatcccaccg
cccggcggcgagaacccgcgtcctggcgcgtccaggcgcggcccggccggcttcgccgag
caggccggccccccaggtcgccgcccggcgccgggcggcaccggttggcgcgcggcgtcg
cccgtcggcccacagagcttcgccgacccggccggcggtggccgcccaccgggtcgcgcc
tacggcgacccggcctcgaacggtgccgccaacccgaacggtcatcccggtctcaacgga
tacgccgaccccagcggctacgccaacccgaacggcaatggcggcccgaacggtggctac
ggcggtcctaacagccacgacccgcttggctatcccagcccgagcggccagggcggcccg
agcagccacgacccgcttggcctctccggtctgaacggctatgccggccccccgaacggc
cgagccgccgcgaatggccaggccggatcgaacggttacgccggatcgaacggtcacggc
gctccgactggtcacggcagccagaacggctacaccgcccagaacggctacggcggccca
gacggctacaccggccaaaacggctatggcagccaaaatggctatggcgcccagaacggc
tacggcggttcggatggttacggcggccagagcggccccggtggccagggccagccggga
cggcaccgcctcgccggcggccccggctccccaggtccgggccttcagcctggcacgccc
ggccccaccggccgcggttccgatgaccgcggcgcggggcgcgggcccggcagccatggc
gctcctggccccaccggccgtgccgacggcccaggctggcggccggcgggcaccgacatc
gacgtctcgggcccgcggcccgcgcagccgcgaccggtcccgcagcagccgaccgcctcg
ccgggtgcctcccggtccgggttcggcgccgggagcacgccctcggccccaccgagcgac
ggcttcggcccgtacggtgcccgccccggcccgcccgccgggccgccgccgaacgcgtcg
ccctggccgagcgattcgtggaatcggccgggcccaccggcaccaccaccaccgccacca
ccggcggccgccgcccgacccgcgcaggcaccggccggccgaccggccgcgccctccgac
cagaccggctttcgcgcccagtcgcagggccgggacggcttcgacgccggcttctccgtc
gactcgcccgcggcccggccggcgaacgggatgcccaacggctggtccgtcggagctccc
gaacaccctgccacccgtcttgccgcgctgacgtcggccccgccggcgcccggcaggccg
ctcccgggcgccggcgtaccgccgcccggcccgccggcggccgtcggcgtcggtgagccg
gcggaccaccggcagaacggctacccgggcggccgccccgccacggtcccaggcccaccg
gccagctgggacccgctggcgccgtccggcgctcgcccgcccgccgagctcacaccggcc
cgcctcccgatggacccgttcgcgacccgggccgcggcagcgcccgccccgggcggccag
gacgcgttcgggcaaaccggtcgcccaggccccgacccgttcgggcgcgacggccgggcc
ggttccgacccgttcggcccgaccggcgcccaacgatccgccccggccccgaacggtgcc
gccaacccggcgcgccccgccgcccccagcccgaacgacccgttcggcgtgaccggctac
ggcaccgctcccgccgcgacggccagcgggccggcggacccctggtcgacggccaacagc
gcctgggcaccgccgccggctccggcacagccgtcctggctgctgaccggcctctcggtc
gagaacccgaacgcgccggccgcgccggctcccacagccgggcaccgcggaacgccgacc
gcggtggcggggcccgggtccggcccgggccgggccggcggatatcccggcgcggccggg
ggcacgccgtccagcgccgcccagcggccgggcgacccgttcgtcctcggcggcccggcg
cagccgcgcccggtcgccgccgggatcaacgtcgacggcggcccggtcgccggtcgcggg
cccaccggcaccaacggccctgggggaaccgcgaacgggttcctcgtcaacggccagaac
ccgggcgcaggcaacggacagctcacggctgccggcggcccgggacacggtcatccgacg
cgtaacggctccgccttcccgcagggagccggccccggccgcgcaccggccaacggctcc
cacctcggggccggcatcgccgtcggcggcggcccggttcccgaccggccgggcgccgcg
ccggccgggccgtggatcgtcgaaggctcggccgaccagcgctccccaggcggccagccc
gcgcagcgcctcgcggccgggcagcaggcccagtccggccagcacctcgcggccgggcag
cgcttcgccacgggccagcatctcgccgccggccaccagcaggccggccagcaacgtccc
ggcgtggacccgcgcggcgcggcccagccggccggcgcccagccgccggccccggtgggt
ccgccgacccaggcgttcgacccgctgttcggcgatctcccgttcgggccgggcgccgcg
ccaagcgacgcgttccccggtgcgctcaccgggcagcggccggccagccagcccgctggc
cagcccggaggtcccctcggcgttcccggggggccgcccatgccggcgggtgtgcccggt
ggtccgaccgcagggcccagcggcccgcggccggccgcgccaggtgccgccggcccgggc
tacccggctcggccaccgatgccaccgcccggcacccccggcccgcccatgatgccgggc
gctccaaccgccttcgcgccgctgcacgaccggcagcccgacttccagccgtcgacgcag
ttccccgcgcccgcgccaagcccgctgccggtaccgccgagcgcgacggcccagcggccg
atggccccggccgacggccgcgcgccgatgccaccacggccaccggccgcaccgccgggg
ttcgccgacccgcgccgcggcgccaacgcctatctcccgacgagcccagacccggtcggc
aggtccgaaacaggccgcggccaggcaccgccggcccggcagcggccaggtcgcgacgac
ctcgacctgttcgacgtgtcctcagcgccgtccgcgatccagccggccggcccgccgcct
cgacggcgcaacacgtcgtccgaccccggccgcagcggcctcgacatcagtgggccgggc
cgctcgaacgggcggcacgccaccggccacccgaacgcggccctctacagcgacgccctg
ttgggcccggcccaggagaccgccgcgcgtggctggcgcaaggtggtctaccaggtgtcg
ggcggggcggtgaaccccggaccgtctccggacgaggcccggcacaaccggctgctcggg
cacatccggaccccgctgaccgactgccaccggatcgccgtgatgtcgctcaagggcggc
gtgggcaagacgacgaccacgatcggcctcggctccaccctcgcggatcttcgcgacgac
cgggtcgtcgccatcgacgccaacccggaccgcggcaccctgggcaccaaggcgcagcaa
ccgtcgccgttcaccgtccgggatctgttggaggactcgcaccgcctcagccggtacgtc
gacatccgcaactacatggcccggtcggactcacggctggacgtgctggcgtccgcggac
gacccggagatctccgaggcgttcgccgactcggactaccacgccgtcgacgacctgctg
cagcgctactactcgatcctgctgaccgactgcgggaccggcatgctgcacagcgcgatg
ggtggcgtcctggcgctggcggacacgctcgtgatcgtcacgagctccagcgcggacggc
ggcaccagcgccagcgccacgctcgactggctggacgcgcacgggtacgcggcccaggtc
cgcgacgcggtcgcggtgatctcgatgttcccgcagaacggtgacgacgtcgacgtggac
gccctggaggcccacttcgccgcgcgcacccggcgggtggtgcgggtcccgtgggacccg
cacctggcgacgggcggccggatcagcctgcacgcgctgaagcgcgagacccgccgcgcg
taccaggagctggccgcggcggtcgccgaacggttcgccccgccggagctggacgacctg
tcctaccccggcgtcaacccgtaccgagacgaccgcctcttctcttag
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