Frigoribacterium sp. NBH87: F1C15_03775 Help Entry F1C15_03775       CDS       T06748                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism frn  Frigoribacterium sp. NBH87 Pathway frn03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:frn00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     F1C15_03775  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:frn03400]     F1C15_03775 Enzymes [BR:frn01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      F1C15_03775 DNA repair and recombination proteins [BR:frn03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      F1C15_03775 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme Motif Other DBs NCBI-ProteinID:  QNE43048 UniProt:  A0A7G6YX33 LinkDB All DBs Position 817580..820246 Genome browser AA seq 888 aa AA seqDB search MGPKGRGERVQVGGHTLQLSNLDKVLYPATGTTKGDVLGYYAAVAEWMLPHVEGRPATRK RWVNGVDGPVFFEKNLPDSAPEWVARHEIQHSDHANTYPLVNDLATLTWLGQVAALEVHV PQWRFGPRGAPRNPDRLVLDLDPGEGVGLAECVEVAQLLRPLLEGMGLELVPVTSGSKGV HLYARLDGRQTSAQVSDVAHELARAVEADHPDLVISTMGKADRRGKVLLDWSQNNGNKTT VAPYSLRGRERPTVATPRTWRELASRQLRQLEYPEVLARLRRRGDPLADVSSGTPVPPAR WSSEDREAIPRRQRRVSGASSVDQHDDMRNTESPEHDPSGDGETRQRHDRLATYRSMRDP AKTREPVPAEAPPTSDGRSFVIQEHHASRLHWDFRLEHDGVLVSWALPKGEPDDPGQNHL AVQTEDHPLEYGTFEGTIAKGEYGAGEVTIWDSGTYELEKWREGKEVIAVLHGEQRGSRR VALIHTGHGGGSSEKNWLIHRMADDAGGGGADGHGGHGGHGGHGSTGVAAGKKKKGRTVI GSGAGSGSARSTRDSSGSSPSSSARGDAGDLEPVSPMLAVAGTAADVDDDWAYEMKWDGI RAVAVVQGDSVTLTSRNGNDLTPAYPELQALAALVDSEGGAVLDGEVVAVDETGRPDFGL LQTRMGLTKPREVEAAAKGAPVRYLLFDVLHAEGRSLVRRTYDERREVLERVVRPEGAVD VPVVFDGDLEAAMRTSQRLRLEGVVAKRRDAAYSPGRRSRAWIKMKHHATQEVVIAGWRP GNGRRASGVGSLLMGVPGDDGLTYVGRVGTGFRDRDLDELLTEFRRVERKTSPLVGVPAA DARDAHWITPSRVGEVSFAEWTSTGRLRQPSWRGWRPDKSPGDVVRES NT seq 2667 nt NT seq  +upstreamnt  +downstreamnt atgggcccgaagggacgcggcgagcgcgtgcaggtcggcggccacacgctgcagctcagc aacctcgacaaggtgctgtaccccgccacgggcacgaccaagggcgacgtgctcggctac tacgccgccgtcgccgagtggatgctgccgcacgtcgagggccgcccggccacccggaag cgctgggtgaacggcgtcgacggtccggtcttcttcgagaagaacctgcccgactcggcg ccggagtgggtggcgcgtcacgagatccagcacagcgaccacgccaacacgtacccgctc gtcaacgacctcgcgacgctgacctggctcggccaggtcgccgcgctcgaggtgcacgtg ccgcagtggcggttcggcccgcgcggcgcgccgcggaaccccgaccggctcgtgctcgac ctcgacccgggcgagggcgtcggcctcgccgagtgcgtcgaggtcgcgcagctgctgcgg ccgctcctcgagggcatgggcctcgagctcgtgccggtcacgagcggcagcaagggggtc cacctctacgcgcggctcgacggccggcagacgagcgcccaggtcagcgacgtcgcccac gagctcgcccgggccgtcgaggccgaccaccccgacctcgtgatcagcacgatgggcaag gccgaccgccgcggcaaggtgctgctcgactggtcgcagaacaacgggaacaagaccacc gtcgcgccgtactcgctgcgcgggcgcgagcggccgacggtcgcgacgccgcgcacctgg cgcgagctggcgtcgaggcagctgcggcagctggagtaccccgaggtgctggcgcgcctg cggcgacgcggtgacccgctggccgacgtgtcgagcggcacccccgtgccgccggcgcgc tggagctcagaggatcgcgaagcgatcccgcgacgccagcgccgagtgagcggagcgagc tcggttgatcagcacgacgacatgcgcaacaccgagtcgcccgagcacgatccgtcgggc gacggcgagacccgccagcgccacgacaggctcgcgacgtaccgctcgatgcgcgacccc gcgaagacgcgcgagcccgtgcccgccgaggcgccgccgacgagcgacggccgcagcttc gtcatccaggagcaccacgcgagccgcctgcactgggacttccgcctcgagcacgacggc gtgctcgtcagctgggcgctgccgaagggcgagcccgacgaccccggccagaaccacctc gccgtccagaccgaggaccacccgctcgagtacggcaccttcgagggcacgatcgcgaag ggcgagtacggcgcgggcgaggtcaccatctgggactccggcacgtacgagctcgagaag tggcgggagggcaaggaggtcatcgcggtgctgcacggcgagcagcgcggcagccggcgg gtcgccctcatccacaccgggcacggcggcgggtcttcggagaagaactggctgatccac cgcatggccgacgacgcgggcggtgggggcgccgacgggcacggcggccacggaggccac ggcgggcacggctcgacgggggtcgccgcagggaagaagaagaagggccggacggtgatc ggctcgggggccggcagcggctccgcccgctcgacccgcgactcctcggggtcgtcgccc tcgtcgagcgcccgcggcgacgcgggcgacctcgagcccgtctcccccatgctcgccgtc gccggcaccgcggccgacgtcgacgacgactgggcctacgagatgaagtgggacggcatc cgcgcggtcgccgtcgtccagggcgacagcgtcaccctgaccagccgcaacgggaacgac ctcacccccgcctaccccgagctgcaggcgctcgccgccctcgtcgacagcgagggaggc gcggtgctcgacggcgaggtcgtggccgtcgacgagaccggtcgccccgacttcggcctg ctgcagacgcggatgggcctgacgaagccgcgcgaggtggaggccgcggcgaagggcgcg cccgtgcggtacctgctcttcgacgtgctgcacgccgagggcaggtcgctcgtgcgacgc acgtacgacgagcgccgcgaggtgctcgagcgcgtggtgcggccggagggcgcggtcgac gtgccggtcgtcttcgacggcgacctggaggcggcgatgcggacgtcgcagcgcctccgg ctggagggggtcgtggcgaagcgccgcgacgcggcctacagccccggccggcgctcgcgg gcctggatcaagatgaagcaccacgcgacccaggaggtggtgatcgccgggtggcggccc ggcaacggtcgccgcgcctccggggtgggctcgctgctgatgggcgtgccgggcgacgac gggctgacgtacgtcgggcgcgtcggcaccgggttccgcgaccgcgacctcgacgagctg ctcaccgagttccgccgcgtcgagaggaagaccagcccgctcgtcggcgtgccggcggcc gacgcccgcgacgcccactggatcacgccgtcgcgcgtcggcgaggtgtcgttcgcggag tggacgtcgaccgggcggctgcggcagccgtcgtggcgcggctggcgacccgacaagtcg ccgggcgacgtggtgcgcgagagctga

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